HsaEX0019148 @ hg38
Exon Skipping
Gene
ENSG00000162777 | DENND2D
Description
DENN domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr1:111194578-111196056:-
Coord C1 exon
chr1:111195916-111196056
Coord A exon
chr1:111195668-111195828
Coord C2 exon
chr1:111194578-111194726
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCTTCCATTAACCAGGTT
3' ss Score
7.67
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATCCTGGATGAAGTGGAGAAGAGACATCAGATCTCCATGGCTGTCATCTACCCGTTCATGCAGGGCCTCCGAGAGGCAGCCTTCCCTGCTCCTGGGAAGACTGTCACTCTCAAGAGCTTCATCCCCGACTCAGGCACTGAG
Seq A exon
GTTAAAGTACAGAGAAACTGAGCCAGATGGGGACTGGGACTTGGTTAGAATGGACAAAGCTGAAATCAAACCCAGATTTTCTGATCCTTCTAACTTGATACCCACAAGCACCTAGTTACTGCTCAAGCCACCAAGACTTTTATTTATAATAAATAAACCAT
Seq C2 exon
TTCATTTCACTGACACGGCCCCTGGACTCCCACCTAGAACATGTGGATTTTAGTTCTCTATTGCACTGTCTCAGTTTTGAACAGATACTTCAGATCTTTGCCTCTGCCGTGCTGGAGAGAAAAATCATCTTCCTGGCGGAAGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
PF0214116=DENN=PD(5.6=57.1)
C2:
PF0214116=DENN=FE(26.5=100)
Main Inclusion Isoform:
ENST00000357640fB2023
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTCATCTACCCGTTCA
R:
CTGAGACCTTCCGCCAGGA
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development