HsaEX0019151 @ hg19
Exon Skipping
Gene
ENSG00000162777 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:26192]
Coordinates
chr1:111731834-111734939:-
Coord C1 exon
chr1:111734762-111734939
Coord A exon
chr1:111733629-111733687
Coord C2 exon
chr1:111731834-111731875
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAAACTTCTTGACTCTGCAGCTC
3' ss Score
6.64
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
CACCTTGTCTCAGTGCATCCATGCTGCTGCCGCACTGCTCTACCCCTTCAGCTGGGCGCACACCTACATCCCTGTTGTCCCTGAGAGCCTTCTGGCCACCGTCTGCTGCCCCACCCCCTTCATGGTTGGAGTACAAATGCGCTTCCAGCAGGAGGTCATGGACAGCCCTATGGAAGAG
Seq A exon
CTCCAGCTCCCTGGAAGCCGTGGCTCCTCTCCTGATGGCCAGTCAGACTCTGGCTTTTG
Seq C2 exon
GTCCTGCTGGTCAATCTTTGTGAAGGAACCTTCTTAATGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.004 A=0.450 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
PF0214116=DENN=PD(1.1=10.0)
C2:
PF0214116=DENN=PD(4.3=57.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACACCTACATCCCTGTTG
R:
TCACAAAGATTGACCAGCAGGAC
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)