HsaEX0019737 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47981661-47983845:+
Coord C1 exon
chr21:47981661-47981718
Coord A exon
chr21:47982668-47982779
Coord C2 exon
chr21:47983771-47983845
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCCGTGTCCCCTGTTACAGTCA
3' ss Score
8.35
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
GGTTCGTTTGGTAGAACGGGGTTCTCCGCACAGCCTGCCATTGATGGAGTCTGGAAAG
Seq A exon
TCACTTCAGGCGGTAGACCAGCCGAGAGTGGAGTCGGGTGAGCTTAGTGGACAGCACATCTGTGGGAGCCGTGGGCTGCTGCACGTCCTCCCTTCTCTGAGCACAGGGACAT
Seq C2 exon
ATCCTCCCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGGACCCTTGGGAGACTCACACCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.553 C2=0.172
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
PF0050123=AMP-binding=PD(0.3=2.6)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGGTAGAACGGGGTTC
R:
CTCTCCCAGGTGTGAGTCTCC
Band lengths:
129-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)