HsaEX0019736 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47980635-47983845:+
Coord C1 exon
chr21:47980635-47980696
Coord A exon
chr21:47981661-47981718
Coord C2 exon
chr21:47983771-47983845
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCCCTTAATTTTTAGGGT
3' ss Score
10.86
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGCACAGCTGGCCCGGACCCCACAACCGTCTACGTGGACATGCGGGCACTGCGCCATGACAG
Seq A exon
GGTTCGTTTGGTAGAACGGGGTTCTCCGCACAGCCTGCCATTGATGGAGTCTGGAAAG
Seq C2 exon
ATCCTCCCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGGACCCTTGGGAGACTCACACCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.133 C2=0.172
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCCCACAACCGTCTA
R:
CTCTCCCAGGTGTGAGTCTCC
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)