GgaEX6041738 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6905150-6907347:-
Coord C1 exon
chr7:6907286-6907347
Coord A exon
chr7:6905692-6905749
Coord C2 exon
chr7:6905150-6905227
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTTATTTTCTCAGGGT
3' ss Score
10.2
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGAACAGCAGGACCAGATCCAACAACAGTCTATGTAGATATGAGAGCACTTCGACATGACAG
Seq A exon
GGTACGTTTGGTAGAGAGAGGTTCTCCACACAGTTTGCCACTTATGGAGTCTGGGAAG
Seq C2 exon
AAGATCCTTCCAGGGGTAAAAGTCATCATAGCACACACAGAAACCAAGGGACCTCTGGGAGACTCGCACTTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'51-53,'51-51,52-53=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGCAGGACCAGATC
R:
TAAGTGCGAGTCTCCCAGAGG
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]