MmuEX6049170 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75731237-75733202:-
Coord C1 exon
chr10:75733141-75733202
Coord A exon
chr10:75732849-75732906
Coord C2 exon
chr10:75731237-75731311
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGTCCATTTTTTAGAGT
3' ss Score
8.98
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GGCACAACAGGCCCAGACCCCACGACCGTCTACGTGGACATGCGGGCACTGCGCCATGACAG
Seq A exon
AGTTCGTCTGGTGGAACGGGGTTCTCCGCATAGTCTACCATTGATGGAGTCTGGAAAG
Seq C2 exon
ATCCTCCCGGGAGTGAAGGTCATCATTGCTCACACTGAGACCAAAGGGCCCCTCGGAGACTCACACCTGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'38-43,'38-42,39-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAACAGGCCCAGACC
R:
CTCACCCAGGTGTGAGTCTCC
Band lengths:
136-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: