BtaEX0011363 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147970184-147973168:+
Coord C1 exon
chr1:147970184-147970245
Coord A exon
chr1:147971032-147971089
Coord C2 exon
chr1:147973094-147973168
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTGTTCGTTTGTAGGGT
3' ss Score
11.59
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGCACGGCCGGCCCAGACCCCACAACTGTCTATGTGGACATGAGGGCACTGCGCCATGACAG
Seq A exon
GGTACGTCTGGTGGAACGGGGCTCTCCGCACAGTCTGCCATTGACTGAGTCTGGAAAG
Seq C2 exon
ATTCTCCCTGGAGTGAAGGTCATCATCGCCCACACAGAGACCAGAGGGCCCCTGGGAGACTCGCACCTGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'38-47,'38-46,39-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACCCCACAACTGTCTA
R:
CCCCCAGGTGCGAGTCTC
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development