DreEX0026996 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:589626-591441:-
Coord C1 exon
chr9:591380-591441
Coord A exon
chr9:590784-590841
Coord C2 exon
chr9:589626-589700
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTCATATTGTTTAGGGT
3' ss Score
8.79
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCACGGCGGGTCCGGATCCCACCACTGTATATCTGGACATGCGGGCGCTGCGGCACGACAG
Seq A exon
GGTTCGATTAGTGGAGAGAGGATCACCGCACAGTCTGCCGCTGATGGAGTCTGGGAAG
Seq C2 exon
ATTCTGCCGGGGGTGAAGGTTATCATCGCCAACACAGAGACGAAAGGACCTCTGGGAGATTCTCATCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'40-42,'40-41,41-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGATCCCACCACTGTAT
R:
TCCCAGATGAGAATCTCCCAGA
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]