HsaEX0019937 @ hg19
Exon Skipping
Gene
ENSG00000108813 | DLX4
Description
distal-less homeobox 4 [Source:HGNC Symbol;Acc:2917]
Coordinates
chr17:48046538-48050633:+
Coord C1 exon
chr17:48046538-48047115
Coord A exon
chr17:48050044-48050279
Coord C2 exon
chr17:48050437-48050633
Length
236 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTGTCATCTCTAGGCC
3' ss Score
12.33
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGGAAAGTCATGGGGGGCACCCCCCCGGAACCCCTTTCCCAGGCGCGCGTTCTCCGCTGAAAGAGGCTCAGAGAGACACTTTCTCCGGGATCTTAAGTGTGGGGGCTGCTGGCTGGGGGGCCCGTCCGGCCCAACGCCGGAGGCTTGGAAAAGAGAGTTGGCAGCGGGAGCGGACTACGTGCCGGGCCATGGCCCTTCTGCCCGGGCCCTGGCCACAATGACCTCTTTGCCCTGCCCCCTCCCCGGCCGGGACGCCTCCAAAGCTGTCTTCCCAGACCTCGCCCCTGTCCCGTCGGTAGCGGCTGCCTACCCGCTTGGCTTGTCCCCTACAACCGCAGCCTCCCCCAATTTGTCCTACTCCAGGCCGTATGGCCACCTCCTGTCTTACCCCTACACCGAGCCAGCGAACCCCGGAGACTCCTACCTGTCCTGCCAGCAACCCGCGGCGCTCTCTCAGCCCCTCTGCGGACCTGCAGAGCACCCTCAGGAACTCGAGGCAG
Seq A exon
GCCTCGGCTCAGCCCTGGACCTAGCCTTTCTGCCCCGCCCTACCCCAAGCTGGCGCCACCGCCCGTGGCTGAACTCCGACCTCCCACCGCAGGCGCCGCGGTACCCTGGCTGTGGCCCTCGGCGCTTTCTTCCTAGGGTCACAGGACCCATACGAGTGGGAGCTCCCTGGGAGCAGAACTGCGTCTTGTATCACCTGGCGCGGTGAACGTGGGGGTTGAAACGCTCCACGCGGAAG
Seq C2 exon
ACTCGGAGAAGCCGCGGCTGTCCCCGGAACCCTCCGAGCGGCGCCCTCAGGCCCCCGCCAAAAAGCTCCGCAAGCCGAGGACCATCTACTCCAGCCTGCAGCTGCAGCACCTAAACCAGCGTTTCCAGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGCTGGCAGCGCAGCTCGGCCTCACCCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108813_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.162 C2=0.374
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(73.7=63.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCCCCCAATTTGTCCTA
R:
TGCTGGAAACGCTGGTTTAGG
Band lengths:
294-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)