HsaEX0019937 @ hg38
Exon Skipping
Gene
ENSG00000108813 | DLX4
Description
distal-less homeobox 4 [Source:HGNC Symbol;Acc:HGNC:2917]
Coordinates
chr17:49969615-49973191:+
Coord C1 exon
chr17:49969615-49969751
Coord A exon
chr17:49972680-49972915
Coord C2 exon
chr17:49973073-49973191
Length
236 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTGTCATCTCTAGGCC
3' ss Score
12.33
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCCGTATGGCCACCTCCTGTCTTACCCCTACACCGAGCCAGCGAACCCCGGAGACTCCTACCTGTCCTGCCAGCAACCCGCGGCGCTCTCTCAGCCCCTCTGCGGACCTGCAGAGCACCCTCAGGAACTCGAGGCAG
Seq A exon
GCCTCGGCTCAGCCCTGGACCTAGCCTTTCTGCCCCGCCCTACCCCAAGCTGGCGCCACCGCCCGTGGCTGAACTCCGACCTCCCACCGCAGGCGCCGCGGTACCCTGGCTGTGGCCCTCGGCGCTTTCTTCCTAGGGTCACAGGACCCATACGAGTGGGAGCTCCCTGGGAGCAGAACTGCGTCTTGTATCACCTGGCGCGGTGAACGTGGGGGTTGAAACGCTCCACGCGGAAG
Seq C2 exon
ACTCGGAGAAGCCGCGGCTGTCCCCGGAACCCTCCGAGCGGCGCCCTCAGGCCCCCGCCAAAAAGCTCCGCAAGCCGAGGACCATCTACTCCAGCCTGCAGCTGCAGCACCTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108813-'1-9,'1-6,3-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.162 C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=63.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGGCCACCTCCTGTCTT
R:
CTGGTTTAGGTGCTGCAGCTG
Band lengths:
254-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development