HsaINT1011209 @ hg38
Intron Retention
Gene
ENSG00000108813 | DLX4
Description
distal-less homeobox 4 [Source:HGNC Symbol;Acc:HGNC:2917]
Coordinates
chr17:49969174-49973269:+
Coord C1 exon
chr17:49969174-49969751
Coord A exon
chr17:49969752-49973072
Coord C2 exon
chr17:49973073-49973269
Length
3321 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGTGTTGTGCTGCCCACCAGACT
3' ss Score
6.6
Exon sequences
Seq C1 exon
AGAGGGCGGGGCCCCCGTCGGGTCCCGGGAACCGAACCCGATGGAGAGGAGGGGGCCCCCATGGATTTAGGGGGGGAGGGGAAAGTCATGGGGGGCACCCCCCCGGAACCCCTTTCCCAGGCGCGCGTTCTCCGCTGAAAGAGGCTCAGAGAGACACTTTCTCCGGGATCTTAAGTGTGGGGGCTGCTGGCTGGGGGGCCCGTCCGGCCCAACGCCGGAGGCTTGGAAAAGAGAGTTGGCAGCGGGAGCGGACTACGTGCCGGGCCATGGCCCTTCTGCCCGGGCCCTGGCCACAATGACCTCTTTGCCCTGCCCCCTCCCCGGCCGGGACGCCTCCAAAGCTGTCTTCCCAGACCTCGCCCCTGTCCCGTCGGTAGCGGCTGCCTACCCGCTTGGCTTGTCCCCTACAACCGCAGCCTCCCCCAATTTGTCCTACTCCAGGCCGTATGGCCACCTCCTGTCTTACCCCTACACCGAGCCAGCGAACCCCGGAGACTCCTACCTGTCCTGCCAGCAACCCGCGGCGCTCTCTCAGCCCCTCTGCGGACCTGCAGAGCACCCTCAGGAACTCGAGGCAG
Seq A exon
GTAAGTTCGGCCGTGGAGGCTCTTCCCACCTCTGGGGTTCGGCTCCTGTGCGCCCCTAAACTTCTCCCTCGCCTGGTTGGACGCAGCTAGCGGGATTCAAACCTTCCTTGGATTCCCTGGGATGTGGGGGTGGGGGGAGGGCGAAGGGATGGGGCGGGAGACACGGGGGGAGGGGCGGGGGAGAGTTGATCTAGGTCTCCTTTCAAAACCGACCTGGTTTCGATTTGCAGTTGTGTAAAGACAGGCGAGAGGGCCCCCCCAACCCCCCACCTGGAGCAGCGGGGCTGTCTGTACCTACTAGTAACGGAAAACTGAAGCAATCCAGATGTGGGGATGGGGGCCTAGCCCCTTTGTCAGAATCCCCCAGCCCCCGTCCTGTACTCCCTTCCTGCCCCATTGTCGCCCCTCTCTGCGTTAGTCTTGTCTCAGAAAGCAGTGATCAAGCCAAACACTGAAAAACAGATCAAGTCCTGGTAGGAGGGCTGTAGACATCGAGGCTTATTCTGGGCTCTGTCCTCTCCCTTCCCTGGCCTTACCCGCTCTCCTCAGACCAGGCCTGACCTTGACTGGAAGCTGGCCTGGCAGAATCTGGGAGTAGGACCCTTCTATCCATTGTTCTGAGAAGGTAGCCAAAGGCTGGTAGGAAAGTCGCTCATCTCTCCCTGACTACCTCAGCCTTCCAGCCAAAGGAGCCGGCCATCGCTGTCATCTCCACTCTTTGGCTTTGGGGTAGGTTAGGCCACAGTTCCCGTTGCCTGGAGCAACTCTGAGCTCCTGAGAAAGTGCTCACTGGAAGGCCTCAATGAAGCGGAGAACCTGGCCCGTCTTTGGGATCCTGGGCCTTGCAGCTGAGCTGACATACAATGTGGGTATGGCATTGCCCACAATCCCATCTGCACTGGCTCCAGCTTAGCCTCCAGGTCTCTGGACTCTCTGCCTCCATCTAATTGCTCACCCCCTCCTCCTGCAATTGTCTTTGGCAGTCTCTTCCAAGGAGGCACACCCATTAGGTGACTTCACTGGAGTCAGCTCAGGACCAAGACATCTTCCTCCCTTCTCCTGTGGCTCTGACATGCTCACAAACCATCAGAGCCAGAAGTGACCCTAGGATTTAGAAGCTCAACTTCTTTGATGTATAGATGGGTAAAGCATGTGGCCAGGAGCATCGATTTTAGGGAGCTTCCTCCAACCCCCCCAAAATTAACTGCCTTCTGTGACAGAACTGTGGCTGTCTCCTGGGCTGCGGAGTGTGGCTGGAGTGGGCGCAGTTGCAGGGAGGAGTAGTTCTAGTTTTTCAAATGAATCCCTTTGACTGTCCTTTAGTGTATGCTAATAGGATATGTTTGTGTGTGTTATGTGTTTGGGGACTGGGGTGGGAATATCATGACCTTGTCCTCAGGGGAATTGCTGGCAGTAGGGTTGGTGTTGTCAGTCTTGTCTGAGATCTAAGGACAACAGAGTGGAGAGTTCATTTTCTTTAAGGACTTTCCCCCATCCAGCGAAAAACCACACACACCCAGATTTCCTTAGAATACATTTCTAGCATTTCTCTGCTGGAACTGGTGGGTTTGGGCGCTCTAGAGTGGAGGGCATGTGATCGAGAGCTTGGGGTCCTCCTTTTACTTCCACTCTATGTCCACTCCTGCCTTGGGAAAAGGTTTGGCTCCAAGTGAGCGGTGCCACCACCCCGTTGAGCCGTAGGGAGCAGCGGGCCTGGAGGGAGGCCTTGGGGCTCCATGATCGCGACCCGGGCAGATCTCGTAACTTGCTGGAACTGGGGTAGGGAAAGGCAGCTGTCCGGGAAGGAACTTGGAGGGGGTCTGCTGGGAGAGTTGGGGCGCGGAGGGCTATGCGAATTCAGCAACCGGGTCGGCCTCAGAGACTCTGCGTCCCCGCTCGAATTGCGCAGTCCACGCAGCCAGAGAGGCGCGGGTGGGCTCTGGGCTGCCAGCCCAGAGCTGCCAGCAGTGGGGTCGAGGCAGGGGAGGCAGGACAGGCGCGGGCGGGAGCGGAAACCCAACGGTTTTTCTGGGAATTGGTTGAGGCAGGGTCGAGGAGGGAGGATCTCAGAAGCCCGCAGCGCCCGAGGCCACGGGTGAGGGATGCGGGGGAGGTGACGGCAGCTGGTGACCGCGGCTGGCCGAGGGCGGGTACACTGACGTGTGGAGGGTGAGCCCGACTAGGGGAAGAAGGTGGGGGGACGCGGGCGGACAGAAGCCGCTCTCTCTCGGCTCAGGTCGGCTGGACAGACCCGCAGGGAATGCGGCGAACGCTGCCCTAAGCGCCCGGGCATTGCGGCTGCTCCATCCGCCCTACTCCTCCCATTGCCTGGGACCTCTGCAGCGTCCCCGTAGAGCCGCGCAGGTTAGGGTGGCTGGCTTGGAAGAACAGAAACCCCTCGGCCCAACCCTCCCCTGTCCCTCAGCATTCTAGGGCTGGGCTGTCCCGCGGCCGAGATTCCTGGAGAGCTAGGCGGGCCAGAGCTGACCAGATCCCCCGCGGCGGCACCGCAGCGCGATCCAGGAGTGGCCCCGCCGGGCTACGCTGCGCGCTCTTGGAACCCGGGTCACCTTCCCTGCCGCCGGAACCGCTCTGTGCGCGCTGCCCAACGAAGGAAGGGGCTGCCCCACGCAGACCCGGCTTCTGGGGGTCCCTGGAAACCCAGGCGGCCACGGTGTGGCGGGGGAGACATGGTCACTTTTCCTGCAGGGTGCGCCTGAGCAGAGGGGCAGCCCGTTACAGTAGGCGAGGCCAGGGCAAACCCGGGGTCACTATCAGCGCTGCGAGACTGGTATTCAAGGTCCTCTCAGCCGGGCCTCTCACCCACCCCGCTGGCCGCAGCCGGAGGCTGCCACGCGGACACCGTCTCAAGCCTCTGAGCATTGCTCTGAGCCTCTGCCTGCAATGTCCTTCCTCTGTCATCTCTAGGCCTCGGCTCAGCCCTGGACCTAGCCTTTCTGCCCCGCCCTACCCCAAGCTGGCGCCACCGCCCGTGGCTGAACTCCGACCTCCCACCGCAGGCGCCGCGGTACCCTGGCTGTGGCCCTCGGCGCTTTCTTCCTAGGGTCACAGGACCCATACGAGTGGGAGCTCCCTGGGAGCAGAACTGCGTCTTGTATCACCTGGCGCGGTGAACGTGGGGGTTGAAACGCTCCACGCGGAAGGTAGAGGGCAGGGGCCAAGGGGGCGATCCTGGTGGCTGCGCTTTTTGCTATTTGCTGCCGACGGCATGCAGACGAGATGCAAATAAGCTTATGAAACTGTCCGTCCTACCCCCTCGCTCCCTCCTCGCCCCCTACACCGTGTTGTGCTGCCCACCAG
Seq C2 exon
ACTCGGAGAAGCCGCGGCTGTCCCCGGAACCCTCCGAGCGGCGCCCTCAGGCCCCCGCCAAAAAGCTCCGCAAGCCGAGGACCATCTACTCCAGCCTGCAGCTGCAGCACCTAAACCAGCGTTTCCAGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGCTGGCAGCGCAGCTCGGCCTCACCCAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108813:ENST00000240306:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.374
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=63.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains