RnoINT0048274 @ rn6
Intron Retention
Gene
ENSRNOG00000004399 | Dlx4
Description
distal-less homeobox 4 [Source:RGD Symbol;Acc:1308744]
Coordinates
chr10:82959980-82963919:-
Coord C1 exon
chr10:82963634-82963919
Coord A exon
chr10:82960168-82963633
Coord C2 exon
chr10:82959980-82960167
Length
3466 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CATGTTCTTCTACCTCCCAGAGT
3' ss Score
7.84
Exon sequences
Seq C1 exon
ATGACCTCTTTACCCTGTCCCCTTCCTGGCCTTGGTCCCTCCAACGTTGTCTTCCCGGACCTCGCCCCCGCCTCGTCGGTAGTGGCTGCTTACCAGCTTGGACTATCCCCCGGAACCGCAGCTTCCCCCGATTTGTCTTTCTCCCAGACCTATGGCCACCTCCTGTCCTATTCCTACCCTGGGCCAGCAACCCCAGGAGACTCCTACCTGTCCAGCCAGCAACAATCCGCGGCGCCGTCTCGGCCCTTTCACCAGCCGACTGAACACCCTCAGGAACTCGAAGCAG
Seq A exon
GTAAGTGGTGACCGCAGCAGCTCTTCTCACCCCTGGGGTCTGGGTTGCCTTTGCATAAATTTCTCGCTCTTCTGCTTGCACGCAGCTAGCGGGATTCAAATGTTTCTCAGATACCCTGGAATCTGCGGTAGGGGGAGGGCGAAGGATGGGGGAGGAGCGGAGGCAAATTGATCTAGGTCTCCTTTTTAAATCCGACCTGGTTTCGATTTGCAGTTTTGTAAAGCCAGGAGGGAGGGCTCCCTACCCCACCCCCCCTGGAGCAGTGGAGTTGTGTGTGTACCTGTGTAACGGGAAACTGCCAAAATCCAGAGGGAAGGGTGGAGACCTAACCCCTTCTCCGTGATTCTCCTCATACTTCACTTCCAACATCATCCCTTTTGAGTTCTGGTCAAAACCAGTGTATAAACCAAACAATGCTAAACAGAAATCAATCCCCAGTTGGAGGTAGGTAGACAAGGCGGGGTTCCTTCTCCTTTCTTGGGCCCCACCCCCTTTCCCCTAGAGGTGCCTAACCCTGTCTGGTAACTGGACCATGCAGAATCTGGATGAGGACCCCACCAACTGTTGCTCAAAGAATAGAGTTACAGGCTGGTCTACCAGTTTCAAGATCTTTCCCTGGCCTCCTCTGCCTTGCTCCTAAGCCATCCTTACAGTCCACCTTCACCCTTAACTTTGGTATATATTTAGACTCAGTTCCTGTTGCCTGCAGCAAATCTGAGCTCCAGAGAAAATGCTCACTGGAAGGCTTTGGTGAAGACAAGGGAGCAGCTGGCCTTCCTAGTCCTGACCTATGCACAGCCCAACTGACAGCCCCTGACGGGCAGTGGGAGAATGCTAGCCATAGACCCACTGACTCCTGGAACAATGAAACACCCCAGCAGTTCTTGCCATCGTCCTCAAACATGCACATCTGCCAAGTGACTTCACGTAGTCAGCCCCAAATGAAGATATTTCTCTTGTTTTCCTTTGTTATTCGGGCATAAATTTACAACCCCGCCCCGCCCCACCCCCCACCCCGCAACCAAGGACACACTAGAATAGGGGCTCAGATTCCTTGTTCTATGGTTGGAGAAACTGAGACAGGAAAAAAAGGGTGCATATAGATCCAGGACACAACTTCTTTTTCCAGGCTCCTGGCCCTGGGCAAATTCACTTTCTTCAAAGAACGGAGTCAGGAAAGGGGACTTCACAGGGCCCCCAGAAAGTAAGCTTTCTGGGGGCAGAGTGGGGGTGGGGCTGCTGGGTCTAGTTGGAGGAGGGGCAGTCGGAGGAGGGGCAGAGTTTTACGTACAGATCTACAAAGGAACCTCTTGGACTCTTCCTTTTAGAATGCTAATATACACTGGGGAAGTGGAAGCAAGAGGGATCCTGAGTTTGGGGATAACCTGGGTAACCTGCTACTCATGGTGCGTGTGCCCATGAGGACAGTGCATTTTGGTACTGGGATGGAAGAAGCTGACCTTATTGGGAGACCTATCTGTCCGTACGATGAAGTCGGCTTTCATATGCCTTCCCTTGCTTGGTCCAAGGACAGTGGACTGGAAAATTCTTTCTATTACATACTTTACCCGGATCCAACGAAAAAAAAAATAAAAGAGACATGTTCACAAGCAGAAACTTCTTTAAAAATATACCATAGCATTTCGCTATTGAAATTGAGGGCCGCCCATTCTTGAATGAGTAATTGGAGTATGAGAGAGGGCTTGGGGTGTTCTACACCCATACTACGTGTGCACCTCCGTCCCAAGGAGGCTTTTGGCTCGGAAAGAGCTTCAGCTACACCCCGTTGAGGCTGCGGGTGCGGCTGCCGCGCCTCCACGGAGGCCCTGGGGACCCGTTATCGCGACCGGGGTAGATCCAGTTGTGACTTGCCAAAACTAGTGTGGAAAAGTCGGCTGTTCCGGAAGGCACCTGGAAGGTGATTTGCTCTGCGAGTTCTGCAGTCTAGGATGCCTTCCTTCCTTCGCTCTCTGCTCTTTATTACCCGAACTGCGTGGTCCAAGCAGTCAAGAAGGCGCACGCACGGGCGGTCACTTGGCTGCCAGCCCCAGGCGGCAAGCAGTAGGGTCGAAGTAGAAGAGACAAGACAGGCAAGGGCGGGAGTGGAAACCCAATGGTTTTTCTGGGAATTGACTGAGGTTCAGATCCAAGGGGTCCCCAAGACCACCGGTTTGGGTGTGGGGGAGGTGAAGGCAGTGGTGACTGCAGGTCGGGAGCGGAGACCCTTACATGTTGGGTGAACCCAGAATGGATGGGGAGCGGAAGGACAGAAACTATGGCTGCCAGGATTCAGGGACATCTCACCTGCTCTATTCTGGGGTCCTCATAGTAGGCCCGCACGGAATGAAGCAACTGTCACCCCAACATTTTGTCATTCTGGGCAGGCATTTTGCTTCTTTGTCTTCCCATTTCTCATCCACTTGGACAGTCTTGGTATTCCATAAAGTGGTCCAGGTTGGGGCCCAGGTTTCGATCTTTTTTTTTTAACCCCACCCTGCCCCCCAAGGTCTCAATCTTGATGCCAACCTGAAGCCTTTTCCTGGAGAATCAAACCAGTAGTGGGTAGTGGGAATTGGGGGGCCTGTGGGAGACACCAGACCTCATGCCACAGCTTTGCAACACCAAGATGACAATATAACAGCCCTTATTGCTGGCAGATCTCTGAGCATTCTAGACCTATCATGAGGGAACGGCTCTGTACTTGTGGCCCACAGGAAAACAAGGCTACCACCCATCAATCTGGCTTCTAGATCCCTTAAAAAGCCTCCCCAGAGGGGCTGGGGATTTAGCTCAGTGATAGAGCCCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAGCCTCCCCAGAGCTAGCCAGCCTGCGGGGAAGAAAAGGATGGTCCTTTTTACTGCAGGGTACACTAGGGCTCACTTTGCCTGACTTCATATTAGCATTTAAAGCTGACTTCTACAGACCCCTTTCAGAAGCAAGAGGCTGCCAGCATTACCTCTGAGCTTTGAGTATTACGTGTAGGTTTCCTGAGTCTTGGATGCACTGCTCTGCTCATCTCTAGACCTTAGCTCAGCTCCCCATGAGTCTTTTGCTCTATTGTAAGCAGGCTGACCAGCCCAACCTTTACCAACATCGCTGCCCCCTCACTGCAGGAGCCTGGGTACCCTTAATTGGGCCCTCAGCGTTTCCTGTTCTTAGGTCCCACAGTGGAAGCTTCAGCAGGGCCAGAACTCAAGAGCTGCAGCTTGTATCAGCTGTTGCTGGTGTGGAAATGGCTCTCACCATCACACACACGTTGAGACCCAGGTTGATGGTGAAGGCTGCAGTTGTTTTTGTTGATTGCCCATGGTATGGGATCCAATGAGTTTATTAAACATAGCTGGCTTACCTGGTCACTCCGCAAGCTTACATCTCCATGTTCTTCTACCTCCCAG
Seq C2 exon
AGTCAGAGAAACTGGCACTGTCCCTGGAACCCTCCCAGCCGTCCCTGACCAGGAAGCTGCGCAAGCCTAGAACCATCTACTCCAGCCTGCAGCTGCAACACCTGAACCAGCGTTTCCAGCATACCCAGTACCTGGCCCTGCCCGAGAGAGCTCAGCTGGCAGCGCAGCTTGGACTCACCCAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004399:ENSRNOT00000005807:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]