MmuINT0050112 @ mm10
Intron Retention
Gene
ENSMUSG00000020871 | Dlx4
Description
distal-less homeobox 4 [Source:MGI Symbol;Acc:MGI:94904]
Coordinates
chr11:95141789-95146263:-
Coord C1 exon
chr11:95145196-95146263
Coord A exon
chr11:95141980-95145195
Coord C2 exon
chr11:95141789-95141979
Length
3216 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AGTGTTCTTCTGCCTCCCAGAAT
3' ss Score
7.21
Exon sequences
Seq C1 exon
GGGGGTGGTGAGGCGCAGTGGCGGCGGTCGCGGCGTGCCAGGCTCTGGGCGCTCGGCGGGGGCGTGCGCGCCACGCGCGTGCGGGGCAGGCTGGGCGCCAGGCGGCACCCTCCAGGCCCCAGCGTCTGTTTACCAACAAACTGCCATCGCTCTGCAGCTACGCATTCCGACGCGCTGAATAAGCGGCCGGCGCTGGCTAGCTGCTTTTTCCACTCCCTCGCAGAGCCCTGGCAGCGTGGGGCCATGCAGACCCGCGCGACGCGCACACAGGTTCTGAGTCTCCAAAGCGTCTCTAGTTACCGCGCAGCTTCCCTCGTCCCCTAGCCATCCCAGGCCCAATTTCCTAGCACCTTGAACATCGTTACTGAGACTTCCTGACTCTACCGATTCCCCAGGAACTCGGAGTTGATGCAGGGATGTGGGGTCCGGAGCTCGCATCCCTCCCGTTTCCCGGTGCACGCTAACACGAGGGGTGGGGGGCGGGCTCAGCTTGAGGTCACCAAGGAATAGCCAATCCGGGGTGTCTAAGTGGGCGGGGGACCCCTGGGGTCCCGGGAACCGAACCCAGAGGAAAAGATGGGGAAGGGTAAAACCACGGGGTACCCCAAAAAACCCTTTCCCGGGTGCGAGTTCTCTGCCGGAAGAGGCTCAGAGAGACATTTTTCCAGGCATCTGAAGTGTAAGAGTGGCTTGCTGGAGCTGGAGACTTTGAAAGGAGCTGGCAGAAAGAGTAGACAGCGTGCGGGCCATGACCTAGGCCCTGTGGCCCGGCACCGGCCGCAATGACCTCTTTACCCTGTCCCCTTCCTGACCGTGGTGCCTCCAACGTTGTCTTCCCGGACCTCGCCCCCGCCCTGTCGGTAGTGGCTGCTTACCCGCTCGGACTATCCCCGGGAACCGCAGCTTCTCCCGATTTGTCCTACTCCCAGTCCTACGGCCACCCCCGGTCCTATTCCCACCCTGGGCCGGCAACCCCAGGAGACTCCTACCTGCCCCGCCAGCAACAATTGGTGGCGCCATCTCAGCCCTTTCACAGGCCGGCTGAACACCCGCAGGAGCTCGAAGCAG
Seq A exon
GTAAGTGTGACCGCGGCGGCTCTCCTCACCTCTGGGGTCTGGGTTGTCTTTGCATAAATTTCGCGTTCTTCTGCTTGCGCGCAACTAGAGGGATTCAAACGCTTCTCTCTCCGATACCCAGGAATCTGCGGTAGGGGGAGGGCGAAGGATGGGGGAGGAGCGGAGGCAAGTTGATCTAGGTCTCCTTTTTAAATTCGACCTGGTTTCGATTTGCAGTTTTGAAAAGCCAGGCGGGAGGGCTCCCTACCCCACCCCCTGGAGCAGTGGAGCTGTGTGAGTACCTGTGTAACGGAAATTTGCCCTAATCCAGATGGAGAGGTGGAGATCTAACCCCTTCCCTGTGATTCTCCTCATCCTTCACTCCGTTCCGACATCATCCCTTTTGAGTTCTGGTCTCAGAAACCAGTATATAAATCAAACACTACTAAACAGAAATCAGTTTCCAGTTGGAGATAGGTAGACAACTAGGCTGGGTTCCTTCTCCTTTCCTGGGCCCCACCCCCTTTTCCTGGAGGTGCCTATACCCTGCAGGATCTGGGTATAAGACCCCCACCAACTGTTGCTCAAATAATAAACTTACAGGCTGGTCTACCAGTCTCCAGCTCTTTCCCTGGCCTCCTCTGCCTTGTGCCTAAGACATCTTTACCATCTCCACCTTTAACTTTGGGATACATTAGACCCAGCTTCGGTTGCCTGCAGCAAATCTGAGCTCCACTGGAAGGCTTCGGTGAAGACAGGGGAGCAGCTGGCCTTCCTAGCTCCGACCTATGCACAGCCCAACTGACAGACCCTGGCTGGCAGTACGAGGATGCTCTCCATAGACCCACTGACTCCTTGAACATCAAAATGGTCCAATTGTTCTTGGCATAGTCCTCGAAGATGCGCAAGTCTGTGATGTGACTTCACATAATCAGCCCCAAACCAAGATGTTTCTCTCCTTTTCCCTGGTCATTCTGGCATAAATTCATGACACATACACCCCCAACCAAAACCACATTAGAATAGAGGCTCACATTCCTTGTTCTATGGTTGGAGAAACTGAGATAGAAGGAATGCATATAGATAGATCCAGGACACAACTTTTTTTTCCAGGCTCCTGGACCAGGGCAAGTTCACTTTCCTCAATGGACGGAGCCAGGAAAGGGGACTTTAGGAACTTCTCAGGACCCCAGAAAGTTAACAGCTTTCTGGAGCAGAGTGGGGGTGGGCCTGCTAGGTTGCTGGGTCTCCTTGGAGGAGGGACAGTCCGTCTGAGTGGCAGAGTTTTGCATACAGATCTACAAAGGAACCGCTTGGACTCTTCTTTTTAGATATACTAATATACACTGGGGAAGTAAAGGCAAGGGGGGTCCTGAGTTTGAGGACAAGTCGGGCAACCTGCTATCCGTCCTGTGTGTGCACATGAGGACAGACAGTGTGCATTTTGGGACTGGAGAGGAAGAACCTGTCCTTATTGGGAGACCTGTCTGGCAATAAGGTGGACCTGTCTTCCATATGCCTTCCCTAGCTTGGTCCAAGAACAATGGACTGAAGAATTCTTTCTATTACGTACTTTACCCGGATACAACGAAAAAATAAAATAAAATAAAACAAAACAGAGACTCCATGTTCACAAACAGATTCTTTAAAAAAAAAATATACCGTAGCATTTCGCTATTGAAATTATGCGGGCCGCCGCCCATTCTTGAATGAATGATTGGAGTACGAGAGAGGGCTTGGGGTGTCCTACGCCCATACTACGGGTGCACCTCCGTCCCAGGGAGGCATTTGGCTCAGAAAGAGCCTCAGCAACACCCCTTTGGGGCTGCGGGTGTGGCTGCCGCGCCTCCACGGAGGCCCTGGGGACCCGTTATCGCGACCGACCGGGGTAGATCCAGTTGTGACTTGCCAAAACTAGTGTGGAAAAAGGCAGCTGTTCCGGAAGGCACCTGGAAGGTGATCTGCTCTGCGAGTTCAGCAGTCCAGGCTGTCTTCCTTCGCGCTCTGCTCGCTATTACCCGAACTGCGCGGTCCAGGCAGCCAAGAAGGCATGGGTTGTCGCTTGGCTGCCGGCCCCGGGTGAGCAGTAGAAGTCGGAGTAGGAGAGACAAGACAGGCGCGGGCGGGAGCGCGGGCGGGAGCGGGAGCGGGAGCGGAAACCCAATGGTTTTTCTGGGAATTGGCTGAGGTTGGAATCCAGGGGACAGGATTTGAGGACCACAGCCCCCAAGGCCACCGGTGAGGGATGTGGGGGAGGTGAAGGCAGTGGTGACTGCGGCCCACGAGCAGAGACCCTAACATCTGTTGGGTGAACCCAGCTAAGAATGGATGGGGAGCTGAAGGACAGAAGCTGCTACTGCTGCCAGGATACAGGCAGGGACATCTCACCCGCTCTATTCTGGGGTCCTCATAGTAGACCTGCACGGAAAGAGGCAGCTGTCACCCCAACATTTTGTCATCCCGGGCAGGCATTTTGCCTCTTCCCATTTCTCATCCCCTTGCACAGTCTCAGTATCCCATAAAGTGGTCCAGGTCGGGGCCCCGGTTTCAAGAATGGAAACCCATGCCCTCAATCTTGACGCCAACCTGAAGCCGCTTCCTATAATAGTGGGAGTTGGGGGCCTGTGGGGGACACCAGACCTTTTGCTACAGCCTACAGCCCAGCGATGACAATATAACAACCCGTATTGCTGGCGGAACATTAAGCTTTCCGGACCTGAATCACTTTCCTTCTGAAGCAACCGCGCTGGGGCCCGCAGGAAATACATCTTGTTTCTAGATCCCTGAAACTTTGAGTATTACTCTTAGGTTTCTTGAGTCTTTGATACACTGCTCTGCTCATCTCCAGACCTTAGCTCAGCTCTCCACGAGTCTTTTGCCCTGTTCTATTCTAAGCAGGTCCACCAACCAACATACCAGCACCCTGCCACCCTGCAGGAGCCTGGGCACCCTTACCCTGGCCCTTGGCGATTTGTGTTCTTAGGTCCTATAGTGGTAGCTTCAGCAGGACAAGAACTCAAGAGCTGAAGCTTGTATTGACTGTTGCTGGTGTTGAAATGGCAGGGATAGGCAAGGCTTGTTCCACTGCACACACACACCGAGACTCAGGTTGATAGTGAAGGCTGCTGTTGTTTTTGCTGATTGCCCATGGTGTGGGATGCGATGAGCTTATTAAGAAATGCCCGACTCACCTGGTCCCTTTGCATGCTTACAGCTTAGTGTTCTTCTGCCTCCCAG
Seq C2 exon
AATCAGAGAAGCTGGCACTGTCTCTGGTGCCCTCCCAGCAGCAGTCCCTGACCAGGAAGCTGCGCAAGCCCAGAACCATCTACTCTAGCCTGCAGCTCCAACACCTGAACCAGCGTTTCCAGCACACCCAATACCTGGCCCTGCCCGAGAGAGCTCAGCTGGCAGCACAACTCGGACTCACCCAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020871:ENSMUST00000021241:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=65.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types