HsaEX0020097 @ hg38
Exon Skipping
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52316319-52321745:+
Coord C1 exon
chr3:52316319-52316545
Coord A exon
chr3:52316977-52317903
Coord C2 exon
chr3:52321648-52321745
Length
927 bp
Sequences
Splice sites
3' ss Seq
ACCACTTCTTTCCCTTACAGAAA
3' ss Score
12.12
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGGGGGTACCCAACCTATACGCAGACCCATTGAGCAGCCAGACTGCCCTAAACAGGGCTATGGAGTCCTTGTCCCTTCTAAGAGCTGTGGACACCTTGCCTCCAGTTCCCCTCACAGTCCTTTCTTCCTTCTGCAGTGATCACTGAGTACCTGTGTGAATGCCAACAAGAAAAATAAAACCACAGTTTGGATTCAGGAAAGGTTGCACCACCATCAGGTCTTGAAGG
Seq A exon
AAAAAATTGGAAGACTAGTACATGGACATCTGTGACCTTCAGATTCCCTAATTGTTATATTGCAGCACTTTTGCTTTATCTCCTCTTTGTCTTTTTATCTAGCTATGCTTACCTATATGTATAATTTTTGCTGAACCATTTGAAAGGAAATTGTAGCGGACATTCTGACGTGTTTCTTCAAACACTTCAGGCCACGTCAACTAAGGACAGTCTGATACAACCACAGTAGCATTATCACATCTAAGAAAATTAACAATAATTCAATATTCAGAATAGGGCAGGAAGATCAAAACCTGAACCCATGCCAGGTGCTGAGAGCAGATGAGGGGCATCAGAGGGTGGGCGCCCGAGCCGAGGGGTGTCGGGCGCATCCGCTGCCCAGCGGAAGCGGCGGCCTGAGTGGAGTCACCGTGCAATGGGTGGGTGTGGCTTTGTGAGCCAAGCCCCAGGAGAACCAGAACCCACCTTTTCCTCAGTGCCCTGACCAGCTGTCCCGCAGCTGTGGCTTAAATGCCAACTTCCAGTTCGTAAATTTCTTCAATTATTCCTCCCCAAATTATTTACATATGTATATGTATTTAAATCAGGATTTAATCAAAGTTCTCACGCTGCATTTAGCTGTTTCGCTGCTTACTCTAAAAGGGCACAGGAGGGAAGATGGGTGGGTAATGGAGCCTAGAAGAGTGACGCTCCCTGGTCGGCCCTAATCCTGCCGATCGGGGCATATGCTGGAACATCCCAGTCCCACTGTCCTGGGCGGAAGTAACCGAGACCTGGAGTTGGTGGGTAGGTAAGGGTTCAGGCTGGGGAGGTTCGCGGACGGAAGCTCCCGCCCTGCGGTGCCGGATGGCCCCGCCCCTTAGCAACGGCCTAGCGTCCCTCCCTAGAGACGGGGCTGATGCATCCCCGCACTGCTCGGTGGAACCG
Seq C2 exon
GTGGTGGATGTGCATGCACCCTGGCGGCATCTGCTGCTCCCTTTGCATAAGACGGGAGGGTATACGTTTCCTGAGCTGATCTGACTCTGAGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841_MULTIEX2-1/4=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCCAACCTATACGCAGAC
R:
GGCTCTCAGAGTCAGATCAGC
Band lengths:
318-1245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development