HsaINT0049137 @ hg38
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52316319-52322775:+
Coord C1 exon
chr3:52316319-52316545
Coord A exon
chr3:52316546-52322408
Coord C2 exon
chr3:52322409-52322775
Length
5863 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACGCTGGGTTCTTCTCCTAGGAG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GGGGGGTACCCAACCTATACGCAGACCCATTGAGCAGCCAGACTGCCCTAAACAGGGCTATGGAGTCCTTGTCCCTTCTAAGAGCTGTGGACACCTTGCCTCCAGTTCCCCTCACAGTCCTTTCTTCCTTCTGCAGTGATCACTGAGTACCTGTGTGAATGCCAACAAGAAAAATAAAACCACAGTTTGGATTCAGGAAAGGTTGCACCACCATCAGGTCTTGAAGG
Seq A exon
GTGAGTAGGAGTCCGCCAGATGCAGGAGTGGATGGAGACAGGTTCTAGACAGAGGAAGCAGAAGCCTGTGCAAGGGCTGAACCACTGTCTCCAGGCATAGATTACACCCTGCCTCTAGGTTCCTCATGGCCTGGCCTCTCCATCTTTCCCACTCAATACACTTTATGGTGGGGATAGGGTCCAGTTCAGTTCCAGACACTTAGTGCCCAGCAACAGGCCTGGCACCAAGCCAGCACGACTAAAATGCCAAGTAAAATTCAACATCAGGGCCTATGACCTCCCCTAGTACTAACCGTCTCAGCAAGTCTGTTTCCCCATCTGTGAAATGGGGCCAGTTTTGAGAAGGCTGTGGGCAGGGGTTCTCAGGTACAGATGGGGTGATGTTTTTCTTTTGGTTCTTTTGGTTTGTAAACCACTTCTTTCCCTTACAGAAAAAATTGGAAGACTAGTACATGGACATCTGTGACCTTCAGATTCCCTAATTGTTATATTGCAGCACTTTTGCTTTATCTCCTCTTTGTCTTTTTATCTAGCTATGCTTACCTATATGTATAATTTTTGCTGAACCATTTGAAAGGAAATTGTAGCGGACATTCTGACGTGTTTCTTCAAACACTTCAGGCCACGTCAACTAAGGACAGTCTGATACAACCACAGTAGCATTATCACATCTAAGAAAATTAACAATAATTCAATATTCAGAATAGGGCAGGAAGATCAAAACCTGAACCCATGCCAGGTGCTGAGAGCAGATGAGGGGCATCAGAGGGTGGGCGCCCGAGCCGAGGGGTGTCGGGCGCATCCGCTGCCCAGCGGAAGCGGCGGCCTGAGTGGAGTCACCGTGCAATGGGTGGGTGTGGCTTTGTGAGCCAAGCCCCAGGAGAACCAGAACCCACCTTTTCCTCAGTGCCCTGACCAGCTGTCCCGCAGCTGTGGCTTAAATGCCAACTTCCAGTTCGTAAATTTCTTCAATTATTCCTCCCCAAATTATTTACATATGTATATGTATTTAAATCAGGATTTAATCAAAGTTCTCACGCTGCATTTAGCTGTTTCGCTGCTTACTCTAAAAGGGCACAGGAGGGAAGATGGGTGGGTAATGGAGCCTAGAAGAGTGACGCTCCCTGGTCGGCCCTAATCCTGCCGATCGGGGCATATGCTGGAACATCCCAGTCCCACTGTCCTGGGCGGAAGTAACCGAGACCTGGAGTTGGTGGGTAGGTAAGGGTTCAGGCTGGGGAGGTTCGCGGACGGAAGCTCCCGCCCTGCGGTGCCGGATGGCCCCGCCCCTTAGCAACGGCCTAGCGTCCCTCCCTAGAGACGGGGCTGATGCATCCCCGCACTGCTCGGTGGAACCGGTACGTCGGTGAGGCGGAGGGGTTGCGGGGCCAGCGCGGGCAGCGGGACCTCGAAAAGGCGCGGAGGGCGAGTGGACGAGGGTGGGGAATGGGGTCTCCCAGGAGTCTGGTTGCTGAGCCTTGGCCAGGGGGAAAGAAGGGAGGTGCACTTTATTTTATTATTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCAGCCTCAGCCTCCTGAATAGCTGGGATTATACGCACCCGCCATCATGCCGGCTAATTTTTGTGTTTTTGTAGAGACGGGGTTTCACCCTGTTGACCAAGCTGGTCTTAAACTCCTGACCTCGGGTGATCCGCCCGCCTGGGCCCAAGTGTTTGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGGAGGTGCACTTCAAACAGCCTTGCAGTGAAGTCCTGTACTTGCCAGACCAGTTTTTGGGCCCCATCCCCATGCTGAGCACGTGGCAGTCCCATCAGCTACCCAATCCTTCTCCAGATCCCTACCAGAGTTGTTACAGAGGTCAACTTCATTCCTTTCTCCACCTTGCCCATCCATTAGTTCATTTGTTCACACAATCATTCAGCAAGTACTTTCTAGGCACCAGCTGTGTGCCAAGCCCATGCCAGCCTCATGCTAGGTGCTAGGTGCCAAGTTTCCAGAGATCAGCGTTACTTGAAAATGCCTACACAGCTGACAGGAAAAACAGATGTGCACATGTAATACAGGGAGAGGTACACTGGAGGGGAAAGACACAGTTGTGGAGGGCAGTTTGCATCGGGTGAATGCTTCAAAACGGTGGAGAGAACCCCAAGCCTGGGGGAGCAATAACCATTCATGGTGTTGTTTGCCTGGTCGCCCCAAGGGCAGATACTTCCCAAATCCCTTAAAGTCGCAGATCCATTTGTCTGCTTATGCAGAACCCCGGGGTGTGAAATGGATAAAGGTGCAGGATCCTTGTTGAATCGGGTGAGTGGCATAGAAGCCCTCCTGCTTATGTGGCTCCCCACAGGCACCCACTTTGCAGAATCTCAGCACCCGGTTGGAGAACCACTGTTGTGATGCTAGAACATGGATCTTTGGGTCAGCCAGAAGTGAAGACCTCAGTTTCCATTCTGGTTCTGCCAAGTGTTTGGTTGTGTGATCTTTGCAAGTTTCTTTACTTTCCTGGGCCCTAGTTTCCTCAGCTGTAAATTGGCAATAATAGTAGTATCTGCTGTGAGGTTGGAATACCCCTATTCATCTGTGTCTCTTCAGCCAAGTGCTTGGCTACTGGTTGAGTCAAGTGGGGTTGAGTGTCAGTGAATCCAACCAGAAGCTTCCTCTGGCTCAAGCCAATAGGGCTCCCAGGTGATCTGAGTGGGGAGAAAGAAGAACTTGGGTTCAAATTTCAACTGTGGCTCTTGCTGGCTCTGTGACCTTGGGCAGGTCACCTAACTTCTCTGAGCTTCATTTTCCTGCCTCTGAGAAATGAGGATACTCTCAGTTCCCACCTCAGAAGTTTAAATGAGATGATGCATAAAATAAGTCTAAGCCACCAATAACATTCACCATTCCCAACACTGTGCCCACCAGGGCCACCCCTGCCATCTCACTGGCCAGTTCCCTTCAACATACAGGGGGAACTGCCCAGAATGACCAGAGGCAGAAGCCTTGCTGGGAGCCATGTTCTTCTCCCTCCTGCCAGTCACACTCATTCCCAGGCAGAGACTGCTGTCACCCATGAGGCCGCGGCAGGAGGCAGACTGGGTCTTTCTTTCTGTCTGTCTGTCTAGCTCCTGAGTATACTGGTAATGCACAGGTGCACAGAGTTGGGGCAGGGCTGGAAGGGAGCCATTGTGAAGGGCTGAGGGATGGAGGGGAAACAGGTTCTGAGTTTGCAGCTCACTCTCACACCTTCTTTGGGACACACCTCGGTGCATCCCCCCCACTGCCAGCTTGCATGGAGGGAAACAGTTTACCGGGGCAGCAAGTTCACCCATTATGGATTCCTTTTGCCCCCAGCAACCCTGCAGTTTCCTGGACATTTGCACATCTGTTATCTCCGAAGATCCTTATAACTCCTTATAATGCACCAGTAAAGCAAACCAAGCATGTAAGCATGTTCAGGCCCATCTGGGAGCTGAGGAAGTCATGGAATGGAATGCTCTCCTGTGGAGCTGGGACCCTGGCCTCTCCAAGCCCTGCTCTGTTGGGTGATTTTGTTCAAAGATGAAACAGTCATCTGTGGGTTTGCAGCATGATGAAGCTGAGCCCCAAGGCGTCCTCTGTTCTTTAGGGTACTTCGGGAAGTGTTGGTGACTGTTAGACAGGTGGGCCAGACTCGGCATTGTCTTCAGCACCTGTCCTGGGAGGCAGCTGGCCACCAGAGACTGGATTCAGGGAGCAGAGTCCCGCTAGGGGAGGCCGGGCAGGCCCGACTGGCTGGAGGCAGGTCGGCCTTTGGGCTGAATGTCTGGGGCTTCCTGCCAGAGCCCCATCTTTCCTTCTTTGGCCCTCAGGCGCCCTGACAACTCACCACTCACTTCTTAGAAATGGACTCAGCTGCTGCATGCTGCTTCAGCACTGCTGGGTAGTTTTGCTCTAGACAGCCCTGGCCACCCACCCCACTCCTCAAGTCAGTGCAGGCAAGGGCCCCCTGCCATGATCCATCAGGAGGCCTACACTAGCACAAAACACCCAGCAAAAAGAGTGCCCTGTTCTTCAAGCTCTTGGCTCTTTGTCTCAGTGTGCAGAAGGGATGGGAAAATGGGATGGGGCCAGGGAAGGGGGGCTTGCTTGGGCTAGGCCTCTATTTCCTTTCATTAAGATGCTTTCCTTTTCTTTCTTTCTTTCCTTTTTTTTTTTTTTTTTTTTGACGGAATCTCGCTCTGTCGCCTAGGCTGGAATGCAGTGGCATGATCTTGGCTCCTTGCAACCTCTGTCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTAGGATTACAAGTGTGCACCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGACCAGGCTGGTCTCTAACTCCTGATCTCAAGTGATCCACCCACGTCAGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCACCAAGCCTGGCCATTTCTTTCTTTTTTCTTTTTTCTTTTTTTTTTTGAGATGGAGTTTTGCTCTTGTCACCCAGGCTGGGGTGCAATGGCGCGATCTGAGTTCACTGTAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCACGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTAATTTTGTATTTTTAGTAGAAATGGGGTTTCACTGTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACCGCCCCGGCCTCTTTTTTTCTAATTGCAATTTTTATTGAGGTAATTGTAGACCCCCTTTTTATTTTTTGCACTAGCATTATGTACAAACCTCTTCTTCACCATACCCTTGTCCAATTTCTTGTCATGTTCTCCTGCCCAAGGATTCTCCGTGGTGATGAATTTTGAGGTAGCCAAAAGCAACAGTGGCTTTGCAAGGGCTTGCTCCTCCCACAATAAAAACTCTATAAACCCTTGTCCTCCAGGTGGTGGATGTGCATGCACCCTGGCGGCATCTGCTGCTCCCTTTGCATAAGACGGGAGGGTATACGTTTCCTGAGCTGATCTGACTCTGAGAGCCAGGGTGGGTGAATGCTATTTTGTTGCTGGTAGAGGGATCTGTGGGCCAATGGAGGGTCAGGATTGGGGTCCTGCTGGGGAGACCATTTAGTCCTCTGGCTCCAGGGTATGGGGGGAGGTCGAGTGGGCAAACACAGGGGAGGCAGGGCATGGTCCAGCGCTCACAGGTGCTAGGGAGGCTCATGCACCACACTGGGAAAAGGTAGGGAAGTCTAGCAGGGATGGGCTGGGGGTGCCAGGGCTGCTACTGGCTGAAAGTCATTTTAGGGAAATTTATTGGGTGAGCAAGCTCTGGGCCTCCCTCCCCATCTCCTGCTACTGAGAAGTCAGGCCTTGCTCTATAAAATGGGGGAGAGGGGTGGACAAGTGCAGTCGCATGCATGGGTTGGGGGCATCTGCAGTGTTTCCCCTCACTCAGCCCTTAACTCTGGGTGGGCTCATTTCTCACATGCAGTGTCCAGGGCAGGCCCCACCCCATCTCCTGGTGGGACTCGGGGTACTGTATGCCTGTCCAGATTAGGAGGAGACCACTCCCTCCTTCTTGCTCTTCTGTTACCCATGGGTCATGGGCTGGGGCTTGTGGCAGGCAGGCAATCTAGGCATCCATGTGTCTCGGGGCTAAGACAGAGGCTGGCAAGGGCTGACTGACGCTGGGTTCTTCTCCTAG
Seq C2 exon
GAGCTTCGGCTGGGGCATCTCCCTGAGAAGCAGCATGGAGCAGCCTAACAGTAAAGGCTATAGCCTGGGAAGGACCCCTCAGGGCCCAGAGTGCAGCAGTGCTCCTGCAGTCCAAGTGGGGACCCACAGGGGCCTAGAGTATAACCCGGGGAAGATTCTTCCAGGATCAGACTATGGGTTGGGAAATCCTCCAGCCCTTGACCCCAAGCTCCCACATTTACCCCTGCCCCCGGCCCCACCCACACTCTCAGACTTGGGGCAGCCACGGAAGTCACCCCTGACAGGCACTGATAAGAAGTACCCGCTGATGAAGCAGCGTGGGTTCTACTCCGACATCCTCAGCCCTGGAACCTTAGATCAACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841:ENST00000486752:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.838
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development