HsaINT0049137 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52350335-52356791:+
Coord C1 exon
chr3:52350335-52350561
Coord A exon
chr3:52350562-52356424
Coord C2 exon
chr3:52356425-52356791
Length
5863 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACGCTGGGTTCTTCTCCTAGGAG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GGGGGGTACCCAACCTATACGCAGACCCATTGAGCAGCCAGACTGCCCTAAACAGGGCTATGGAGTCCTTGTCCCTTCTAAGAGCTGTGGACACCTTGCCTCCAGTTCCCCTCACAGTCCTTTCTTCCTTCTGCAGTGATCACTGAGTACCTGTGTGAATGCCAACAAGAAAAATAAAACCACAGTTTGGATTCAGGAAAGGTTGCACCACCATCAGGTCTTGAAGG
Seq A exon
GTGAGTAGGAGTCCGCCAGATGCAGGAGTGGATGGAGACAGGTTCTAGACAGAGGAAGCAGAAGCCTGTGCAAGGGCTGAACCACTGTCTCCAGGCATAGATTACACCCTGCCTCTAGGTTCCTCATGGCCTGGCCTCTCCATCTTTCCCACTCAATACACTTTATGGTGGGGATAGGGTCCAGTTCAGTTCCAGACACTTAGTGCCCAGCAACAGGCCTGGCACCAAGCCAGCACGACTAAAATGCCAAGTAAAATTCAACATCAGGGCCTATGACCTCCCCTAGTACTAACCGTCTCAGCAAGTCTGTTTCCCCATCTGTGAAATGGGGCCAGTTTTGAGAAGGCTGTGGGCAGGGGTTCTCAGGTACAGATGGGGTGATGTTTTTCTTTTGGTTCTTTTGGTTTGTAAACCACTTCTTTCCCTTACAGAAAAAATTGGAAGACTAGTACATGGACATCTGTGACCTTCAGATTCCCTAATTGTTATATTGCAGCACTTTTGCTTTATCTCCTCTTTGTCTTTTTATCTAGCTATGCTTACCTATATGTATAATTTTTGCTGAACCATTTGAAAGGAAATTGTAGCGGACATTCTGACGTGTTTCTTCAAACACTTCAGGCCACGTCAACTAAGGACAGTCTGATACAACCACAGTAGCATTATCACATCTAAGAAAATTAACAATAATTCAATATTCAGAATAGGGCAGGAAGATCAAAACCTGAACCCATGCCAGGTGCTGAGAGCAGATGAGGGGCATCAGAGGGTGGGCGCCCGAGCCGAGGGGTGTCGGGCGCATCCGCTGCCCAGCGGAAGCGGCGGCCTGAGTGGAGTCACCGTGCAATGGGTGGGTGTGGCTTTGTGAGCCAAGCCCCAGGAGAACCAGAACCCACCTTTTCCTCAGTGCCCTGACCAGCTGTCCCGCAGCTGTGGCTTAAATGCCAACTTCCAGTTCGTAAATTTCTTCAATTATTCCTCCCCAAATTATTTACATATGTATATGTATTTAAATCAGGATTTAATCAAAGTTCTCACGCTGCATTTAGCTGTTTCGCTGCTTACTCTAAAAGGGCACAGGAGGGAAGATGGGTGGGTAATGGAGCCTAGAAGAGTGACGCTCCCTGGTCGGCCCTAATCCTGCCGATCGGGGCATATGCTGGAACATCCCAGTCCCACTGTCCTGGGCGGAAGTAACCGAGACCTGGAGTTGGTGGGTAGGTAAGGGTTCAGGCTGGGGAGGTTCGCGGACGGAAGCTCCCGCCCTGCGGTGCCGGATGGCCCCGCCCCTTAGCAACGGCCTAGCGTCCCTCCCTAGAGACGGGGCTGATGCATCCCCGCACTGCTCGGTGGAACCGGTACGTCGGTGAGGCGGAGGGGTTGCGGGGCCAGCGCGGGCAGCGGGACCTCGAAAAGGCGCGGAGGGCGAGTGGACGAGGGTGGGGAATGGGGTCTCCCAGGAGTCTGGTTGCTGAGCCTTGGCCAGGGGGAAAGAAGGGAGGTGCACTTTATTTTATTATTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCAGCCTCAGCCTCCTGAATAGCTGGGATTATACGCACCCGCCATCATGCCGGCTAATTTTTGTGTTTTTGTAGAGACGGGGTTTCACCCTGTTGACCAAGCTGGTCTTAAACTCCTGACCTCGGGTGATCCGCCCGCCTGGGCCCAAGTGTTTGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGGAGGTGCACTTCAAACAGCCTTGCAGTGAAGTCCTGTACTTGCCAGACCAGTTTTTGGGCCCCATCCCCATGCTGAGCACGTGGCAGTCCCATCAGCTACCCAATCCTTCTCCAGATCCCTACCAGAGTTGTTACAGAGGTCAACTTCATTCCTTTCTCCACCTTGCCCATCCATTAGTTCATTTGTTCACACAATCATTCAGCAAGTACTTTCTAGGCACCAGCTGTGTGCCAAGCCCATGCCAGCCTCATGCTAGGTGCTAGGTGCCAAGTTTCCAGAGATCAGCGTTACTTGAAAATGCCTACACAGCTGACAGGAAAAACAGATGTGCACATGTAATACAGGGAGAGGTACACTGGAGGGGAAAGACACAGTTGTGGAGGGCAGTTTGCATCGGGTGAATGCTTCAAAACGGTGGAGAGAACCCCAAGCCTGGGGGAGCAATAACCATTCATGGTGTTGTTTGCCTGGTCGCCCCAAGGGCAGATACTTCCCAAATCCCTTAAAGTCGCAGATCCATTTGTCTGCTTATGCAGAACCCCGGGGTGTGAAATGGATAAAGGTGCAGGATCCTTGTTGAATCGGGTGAGTGGCATAGAAGCCCTCCTGCTTATGTGGCTCCCCACAGGCACCCACTTTGCAGAATCTCAGCACCCGGTTGGAGAACCACTGTTGTGATGCTAGAACATGGATCTTTGGGTCAGCCAGAAGTGAAGACCTCAGTTTCCATTCTGGTTCTGCCAAGTGTTTGGTTGTGTGATCTTTGCAAGTTTCTTTACTTTCCTGGGCCCTAGTTTCCTCAGCTGTAAATTGGCAATAATAGTAGTATCTGCTGTGAGGTTGGAATACCCCTATTCATCTGTGTCTCTTCAGCCAAGTGCTTGGCTACTGGTTGAGTCAAGTGGGGTTGAGTGTCAGTGAATCCAACCAGAAGCTTCCTCTGGCTCAAGCCAATAGGGCTCCCAGGTGATCTGAGTGGGGAGAAAGAAGAACTTGGGTTCAAATTTCAACTGTGGCTCTTGCTGGCTCTGTGACCTTGGGCAGGTCACCTAACTTCTCTGAGCTTCATTTTCCTGCCTCTGAGAAATGAGGATACTCTCAGTTCCCACCTCAGAAGTTTAAATGAGATGATGCATAAAATAAGTCTAAGCCACCAATAACATTCACCATTCCCAACACTGTGCCCACCAGGGCCACCCCTGCCATCTCACTGGCCAGTTCCCTTCAACATACAGGGGGAACTGCCCAGAATGACCAGAGGCAGAAGCCTTGCTGGGAGCCATGTTCTTCTCCCTCCTGCCAGTCACACTCATTCCCAGGCAGAGACTGCTGTCACCCATGAGGCCGCGGCAGGAGGCAGACTGGGTCTTTCTTTCTGTCTGTCTGTCTAGCTCCTGAGTATACTGGTAATGCACAGGTGCACAGAGTTGGGGCAGGGCTGGAAGGGAGCCATTGTGAAGGGCTGAGGGATGGAGGGGAAACAGGTTCTGAGTTTGCAGCTCACTCTCACACCTTCTTTGGGACACACCTCGGTGCATCCCCCCCACTGCCAGCTTGCATGGAGGGAAACAGTTTACCGGGGCAGCAAGTTCACCCATTATGGATTCCTTTTGCCCCCAGCAACCCTGCAGTTTCCTGGACATTTGCACATCTGTTATCTCCGAAGATCCTTATAACTCCTTATAATGCACCAGTAAAGCAAACCAAGCATGTAAGCATGTTCAGGCCCATCTGGGAGCTGAGGAAGTCATGGAATGGAATGCTCTCCTGTGGAGCTGGGACCCTGGCCTCTCCAAGCCCTGCTCTGTTGGGTGATTTTGTTCAAAGATGAAACAGTCATCTGTGGGTTTGCAGCATGATGAAGCTGAGCCCCAAGGCGTCCTCTGTTCTTTAGGGTACTTCGGGAAGTGTTGGTGACTGTTAGACAGGTGGGCCAGACTCGGCATTGTCTTCAGCACCTGTCCTGGGAGGCAGCTGGCCACCAGAGACTGGATTCAGGGAGCAGAGTCCCGCTAGGGGAGGCCGGGCAGGCCCGACTGGCTGGAGGCAGGTCGGCCTTTGGGCTGAATGTCTGGGGCTTCCTGCCAGAGCCCCATCTTTCCTTCTTTGGCCCTCAGGCGCCCTGACAACTCACCACTCACTTCTTAGAAATGGACTCAGCTGCTGCATGCTGCTTCAGCACTGCTGGGTAGTTTTGCTCTAGACAGCCCTGGCCACCCACCCCACTCCTCAAGTCAGTGCAGGCAAGGGCCCCCTGCCATGATCCATCAGGAGGCCTACACTAGCACAAAACACCCAGCAAAAAGAGTGCCCTGTTCTTCAAGCTCTTGGCTCTTTGTCTCAGTGTGCAGAAGGGATGGGAAAATGGGATGGGGCCAGGGAAGGGGGGCTTGCTTGGGCTAGGCCTCTATTTCCTTTCATTAAGATGCTTTCCTTTTCTTTCTTTCTTTCCTTTTTTTTTTTTTTTTTTTTGACGGAATCTCGCTCTGTCGCCTAGGCTGGAATGCAGTGGCATGATCTTGGCTCCTTGCAACCTCTGTCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTAGGATTACAAGTGTGCACCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGACCAGGCTGGTCTCTAACTCCTGATCTCAAGTGATCCACCCACGTCAGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCACCAAGCCTGGCCATTTCTTTCTTTTTTCTTTTTTCTTTTTTTTTTTGAGATGGAGTTTTGCTCTTGTCACCCAGGCTGGGGTGCAATGGCGCGATCTGAGTTCACTGTAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCACGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTAATTTTGTATTTTTAGTAGAAATGGGGTTTCACTGTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACCGCCCCGGCCTCTTTTTTTCTAATTGCAATTTTTATTGAGGTAATTGTAGACCCCCTTTTTATTTTTTGCACTAGCATTATGTACAAACCTCTTCTTCACCATACCCTTGTCCAATTTCTTGTCATGTTCTCCTGCCCAAGGATTCTCCGTGGTGATGAATTTTGAGGTAGCCAAAAGCAACAGTGGCTTTGCAAGGGCTTGCTCCTCCCACAATAAAAACTCTATAAACCCTTGTCCTCCAGGTGGTGGATGTGCATGCACCCTGGCGGCATCTGCTGCTCCCTTTGCATAAGACGGGAGGGTATACGTTTCCTGAGCTGATCTGACTCTGAGAGCCAGGGTGGGTGAATGCTATTTTGTTGCTGGTAGAGGGATCTGTGGGCCAATGGAGGGTCAGGATTGGGGTCCTGCTGGGGAGACCATTTAGTCCTCTGGCTCCAGGGTATGGGGGGAGGTCGAGTGGGCAAACACAGGGGAGGCAGGGCATGGTCCAGCGCTCACAGGTGCTAGGGAGGCTCATGCACCACACTGGGAAAAGGTAGGGAAGTCTAGCAGGGATGGGCTGGGGGTGCCAGGGCTGCTACTGGCTGAAAGTCATTTTAGGGAAATTTATTGGGTGAGCAAGCTCTGGGCCTCCCTCCCCATCTCCTGCTACTGAGAAGTCAGGCCTTGCTCTATAAAATGGGGGAGAGGGGTGGACAAGTGCAGTCGCATGCATGGGTTGGGGGCATCTGCAGTGTTTCCCCTCACTCAGCCCTTAACTCTGGGTGGGCTCATTTCTCACATGCAGTGTCCAGGGCAGGCCCCACCCCATCTCCTGGTGGGACTCGGGGTACTGTATGCCTGTCCAGATTAGGAGGAGACCACTCCCTCCTTCTTGCTCTTCTGTTACCCATGGGTCATGGGCTGGGGCTTGTGGCAGGCAGGCAATCTAGGCATCCATGTGTCTCGGGGCTAAGACAGAGGCTGGCAAGGGCTGACTGACGCTGGGTTCTTCTCCTAG
Seq C2 exon
GAGCTTCGGCTGGGGCATCTCCCTGAGAAGCAGCATGGAGCAGCCTAACAGTAAAGGCTATAGCCTGGGAAGGACCCCTCAGGGCCCAGAGTGCAGCAGTGCTCCTGCAGTCCAAGTGGGGACCCACAGGGGCCTAGAGTATAACCCGGGGAAGATTCTTCCAGGATCAGACTATGGGTTGGGAAATCCTCCAGCCCTTGACCCCAAGCTCCCACATTTACCCCTGCCCCCGGCCCCACCCACACTCTCAGACTTGGGGCAGCCACGGAAGTCACCCCTGACAGGCACTGATAAGAAGTACCCGCTGATGAAGCAGCGTGGGTTCTACTCCGACATCCTCAGCCCTGGAACCTTAGATCAACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.838
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)