RnoINT0048570 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7402815-7403843:-
Coord C1 exon
chr16:7403714-7403843
Coord A exon
chr16:7403137-7403713
Coord C2 exon
chr16:7402815-7403136
Length
577 bp
Sequences
Splice sites
5' ss Seq
GGTGTACGT
5' ss Score
4.36
3' ss Seq
GACACTGAATCTTTTCCTAGGAG
3' ss Score
6.63
Exon sequences
Seq C1 exon
GATTTCCTTCCCCTGATGATAATAATGTTTGGGGGCAGTTTTGGAAGGACCTGCAAACCCCTCTCCTCGTGGTGGTGTATGTGCACGGGGCCCAGTGCCAACTGCTTCTCCCTATTGAAAACAGGAGGGT
Seq A exon
GTACGTCCCTGGGGCTGAGCTGACTCTCTGAAACAGGGTCAATGGATGCCACTTTGTTGGAGGATGTGCGGGTGGTCATATTTGGACTACTATTGGCAAAATCATGGAGTCCTCTGATGCCTGGTGTATGGGAGAGACGGAACGGGCAAGCACAGGTGTGGGTGGATACGACAGCCTGAGTCCACATGGAGAAGAAGGAAGTCCAGCAGGTCTGGGCTAGGGCACTGGACCTGCTTCTGACTCCATGAAAGCCTTTCACTGAGTAGGCGAGCTCTGGGTCTGCCCCTTTATCTCCCCCAGCAGGGAAGCCGGGGCTTGCTGGCTCAATGGAAGGGAAGGAGTGGGAAGGTCAGGAGGCATGAGTTAGAAGCATCTACAGGGTTTCCTTCCCTCAACCCTTGGCTCTCCAGGAAAGCCGTTGTCACCTGTGGGACCCCTGGCATTGTCTATCCTCTTGTGTTACCCAGTGGACTTGGACTTGAGGTGGAGAGCCGGCCTGACCCATCTGTGAATCGTGGTGTTACCTGAGCTGACACAGAGGCTGTCAGAGTGTAAACGACACTGAATCTTTTCCTAG
Seq C2 exon
GAGCTCTGGCTCGGACAAGTCTCTGAAGAACGGCATGGAGGAGTGTGATAAAGAAGAAGCGAGCACTAGCTCTCAGGGCCCAGGATACTGTCCAGCGAACGTTCCTGAAAATCATGACCTGGAGAAGATGTTAAAAGAATCAAGCCGTAATCCAGAAAAGACTTCCCCAAATCCCGAACTCAAGACCCCACCTTTACCCCTCTCAGACTTAGGGCAGCCCAGGAAGTCGCCTTTGGCAGGCACCGATAAGAAGTACCCCATCATGAAGCAGCGTGGATTCTATTCCGACATCCTCAGCCCTGGAACCTTAGACCAGCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.770
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCTCGTGGTGGTGTAT
R:
ATCCACGCTGCTTCATGATGG
Band lengths:
349-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]