MmuINT0050492 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32132911-32137082:-
Coord C1 exon
chr14:32137049-32137082
Coord A exon
chr14:32133233-32137048
Coord C2 exon
chr14:32132911-32133232
Length
3816 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
ACGATACTGACTTTTCCTAGGAG
3' ss Score
6.3
Exon sequences
Seq C1 exon
GAAGCACTGAAAACTTTGCTGTTTAGGGGAGCCG
Seq A exon
GTAGGTCCATGAGGAGGCGGGATGATCGGGTTGGGGAAAATTCATTAAGGTGTAGAAGTGAGTGGACACGGAGGAAGCACTCTTAAGATCACCATTCCCCCTCTCCCACATCCCCTACAGAGCCTTGTCGGGGTCGGGCTGTGGGAATAGTGTATAGGAGAAGGCACTTAAGGGCCTTGCTGTTAAGACCTAACAGCACAATGTTTGGGGCTCGGATCCTTCTATGCAGGGAGTGTGTGACTCAATGCCCCCCTTCTACCAGACACCCACCCATTCTCTCTCTTTATCTGAGTTGTTACAGAGATGGGCTTCATCCCTTCCTTTACAAACCCCATTCAATTATTTGTTGGTTCACATAGTCACTCAGCAAATGCATTGTGGGGACCTTCTGCGTTCCCCGTGGTAAGTACCCAGTTTCCAGAGAACAGTGTTACTTGAAAAGTCCTGTTCAGCAGGCAGGGAAGAACAAAGTACCATATAATTTCAGGCTGCGTTCAATGGTGCAAGAAGCTGTGGGCACAGAGCCAGTTTTCTCAGGTGACTACATCTGAAGGATGAAGGAAGCCCCAAGCTTGTAAGAGAAATGACCAACTCCTATGCTGCTTTCTGTGTAGTCTCAGCAGAGGTAGAGACTTCCAAAATCCTTTAAAGTTCACATTCGTTGCCAAATGAGAGCTTGCATTGTACCCTGAGATTTTCAAAGGGATGCAAGCGCGGGTACTTTTTGAGTCCGCAGATGGATAATTTGGAAGCCCTCCTGCTCAGGTCCTCCTTGGGCAGCTATTTTGCACACATCTCAGGGCTTCTCCATATACCTCTTTGGACCTGAGTGTCCTTGTTTGAACCGTTGAAGGTGGTAGTGATGGTGGTGGTGGTGATGATGGTGGTGATATTGATGATGGTGGTGGTGATGGTGGTGGTATTGATGTTGGTGGTGGTGATGGTGGTGGTAATGATGGTGGTGTTGATGATGATGGTGGTGGTGATGGCGGTGGTGGTAGTGCTGGTGGTGGTGGTAGTGCCTGTTATGAGGACCACACACCTCTGTGCTCCCCAACTCCCACACTCGTTCAGCCAAGTGGTTGAGCATGTGGGTGCCTCTTGTTGACTGTGAAGCATTGGCCAGGTCATAGGACCTTTTGAGGGTTTATCTTCTCGACTCTGAGAAATGAGAATAATCTCAATTTCCACATAGGTTTTAAATGGGATTGTGTTATGAAATGAGTCCACAAGCCCGACAACGCTGTTCCAAGTTCTGGACCTGCTGGGACCAAACCTGCCATCTCAGCAGCTTCTTTCCTCACATAAAGTTGGAGGGGGGGGAGTTCCCAGGGTGACCAGCAGCAGAGGCCTTGCTGTGAATCATGTCCTCTCTCGCACTAGCCACACTCATTCCCAGGCCTAGGCCCTGTCACCCATGGTAAGACGACAGAAGTTTGTCTTTACAATTCCTGCACATGCTGATCTATGTAGGTGCCCAGCGGGGTTCTGAGTCTGCAGCCCATGTTTCCACCTTCCCTCTTGGGCTGTGTTAATGAGTTCCTCCTACTACAACCTGCTCAGAGAGGGAGAGAGGAGGGGGGAGGGGGAGGGAGAGGAGTGGGAGGGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTATTCCCATGTCCCAGCAAAGCAGGCCAGACATACTGAATATACTGACTGGAGAAGCCAAGACTGAAACGCTTTCCTATGGAGATGGGACCCTGAACCCCAGCTGTCTGTATGCTGGTTTGTTCAAAGATGCTATCTGTGGGTTTACAGGATGAGGAAGCTGGACCTCAGGGAGTCATCTTTTCTGTTCTGTTGTCCTGAAAGGGGCAGTGAGAGTCACACAGGTAGACTTTCTGTTCTGTTGTCCTGAAAGGGGCAGTGAGAGTCACACAGGTAGACCAGACTTGGTCTTACCTTTAGTATCTGCCCTAGGAGGCAGCTGGTCACCAGGAATGGGTGCGGGTAGTTTCCCACAGGGAGGCCTGTCAGGTCTGCCTATTTAGAGGATGGTGAGCCTTTATGCAGAGAGTCTAGGACTTCTACTAGAGACCCACCTGCCTTTGCCCCTCAAATGGCTTCCGGGTCATCGTCTTGTACTTAGACAGTGTAGTTGCAGATGCTGCAACTGACTTCTGGGCTGCGGTGCAAGGTTGGTCCATGTAGGTCCACCCCACTCCCTGTGGTAGTATAGATGAGATACTCTGCCGCAGTGTAAAAGAAGACATGCGCCAGTCCCACTGAGAGTGGACCACCCCCAATACATCCACGGCTGGCCAGCACTGCAAGCGCCTGCTTGCTTTGTCACTGTGTGTCGAGGAGGTGACAGAATGAGATGAGGGCTCACCAGCTCAGAACTCTGTTTCTTTTGTGCAGGGGAGATGGCTCAGCGGTTATAGTGCTTGCTGCACACACGGAAGGCCTTGAGTTCAGGTCCCTAACCAGTGTAAAAGCCAGGTGTGATGATGTACACTTGTAAATCCAGCACTGGGGGATGGCAGAGGCAGGTGGGTTCCGGGAGCTCGCTGACCTGCCATCCTAACTGAACGGGTGACCTCTAGGTTCCGTGAGAGCCCTCATCTAAAAATAATAATAATGAGGCTTGCAAGATGCCTCAGCGAGGAAAGAAAGGCACCTGTCACGGAGCCTGCATTCAACCCGGAGACCCACGTATTGGACAGAACTGACTCCTAACAGTTGTCCTCTGACCTCCACACATAGGCTGTGGCACATGCACATACACGCATACTAAGTAAATGTACAAAGAATACAGAGAAGTCTGGGGGGATATGGCTGAACTCAGCCCTGGCCTCTCTATGTGTACACACAGCTGAGCACATCCAGACACATATGGACACATGTTTATACAGAACACACACGTGCGTGCGCACTCATGATTTTTTTTTTATTGAAATTTTTATTGAGGTAACTGCAGACATTCTTTTTATTCCTGAGCCATCCTTAAGTGAAAACCTGTCATTCCCCGCACACTTATCTGATTTACTGTAACATTCTCCTGCTTAAAGGATTGCTCTTGATGATAATGTTTTGGGGTAGTGAAAAAAGCAGCAGTAGTTTTGGAAGGACTTGCTAATAATGACCTGCAAACCCTTCTCCTCAAGGTGGTAGATGTGCCCAGGGCCCAGGGCTACCTGCTATTCCCTTTGTGAAGACAAGAGGGTATGCATTCCTTGAGCTGAGCTGACCCTCTAAGTCAGGGTCGGTGGATGCCACTTTGTGGCTTATAGGAGGATCTGTGGGCCTATGGAGGGCTATATTTGGCCTACTATTGGCAAGATCACAGAGTCCTTTGATTCCTGGGTTATGGGAGAGATGGAGTGGGTAAGCACAGGTGTGGGATGGGTATCGTGGCCTTGTGCCCACATGGAGGAGAAGAGAGCCCGACAGGTCTGGGCTGGGGCACTGGACCTGGTTCTGACGCTATGAAAACTTTTCACTGGACAGGTGAGCTCTGAGTCTGCCCCTTCATCTCCCACAGCAGGGAAGGCAGGCCTTGCTGGCTAACTGAAGGGGAAGAGTGGAAGGTGGGGAGGCACTGCATTAGAGGCATCTACAGAGTTTCCTTCTCTCAACCCTTGACTCTCAAGGAGAGCCATTGTCCCCTGTGGGACTCCTGGCATTGTCTGTCCTCTTGTGCTCCCCATGAACAGAAGACTTGGACTTGAGGCAGAGAGGCAGGTTAACCCATCTGTGAATCATGGTGTTAACTGGGCTGATTCAGAGGCTGTCCGAGTGTAAACGATACTGACTTTTCCTAG
Seq C2 exon
GAGCTCTGGCTGGGACGCCTCTCTGAAGAACAGCATGGAGGAGTGTAATAAAGAAGGACCAAGCAGCAGCTCTCAGGGCCCAGGATACTGTCCGGTGAAGGTTCCTGAAAGCCATGACCTGGAGAAGATATTACAAGAATCAAATTATCATCCAGAAAGAAATCCCCTAAATCCTGACCCCAAGACCCCGCCTTTACCCCTCACAGACCTAAGACAGCCCAGGAAGTCGCCTTTGACAGGCACTGATAAGAAGTACCCCCTGATGAAGCAGCGCGGATTCTATTCTGACATCCTCAGCCCTGGAACCTTAGACAAGCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.719
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: