HsaEX0020124 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225334806-225339775:+
Coord C1 exon
chr1:225334806-225334951
Coord A exon
chr1:225335893-225335987
Coord C2 exon
chr1:225339707-225339775
Length
95 bp
Sequences
Splice sites
3' ss Seq
AATGGTAGTTCTGTTTTTAGGTC
3' ss Score
6.49
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATAGTGAGAAAATTTTTCTTTGGACTAGTTCAGTCAGGAGCATGGAGTTGTTTTGATGAATTCAATCTAATTGATTTGGAAGTTCTCTCTGTCATTGCCTCACAGATCCTAACAATTAAGGCTGCAAAAGACAACTATTCTGCCAG
Seq A exon
GTCTTTGAGGAATCGCCACACTGTCTCTCACAATAATGGAACTAATTTACACTCCCACCAACAGTGTATAAGTGTTCCTTCTTCTCTACAACCTT
Seq C2 exon
GTTTGTACTGGAAGGAAAAGAAATTCGTATCAATATGTCTTGTGCGGTATTTATCACCATGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'48-55,'48-53,50-55
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.5=100)
A:
PF127742=AAA_6=PD(4.7=18.2)
C2:
PF127742=AAA_6=FE(10.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGGAGCATGGAGTTGT
R:
TGGTGATAAATACCGCACAAGACA
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)