HsaEX0020161 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225311229-225339775:+
Coord C1 exon
chr1:225311229-225311316
Coord A exon
chr1:225332099-225332330
Coord C2 exon
chr1:225339707-225339775
Length
232 bp
Sequences
Splice sites
3' ss Seq
ATTTAAAATTTGGCTTTCAGACA
3' ss Score
6.29
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATTTTTAAGTCAAGGGATTGAAGACTGGAACTGCCAGATGTTTTCCCAATGGGTGTTATCTCATCCAGGACAAGTGGTACTTACTGTG
Seq A exon
ACATTTGCAATATAAATGGAATGAAAAACAAAAGTTGTGCTATGTGTCTCAAGGAAATGCCAGCTTTACTTATGGCTATGAGTACTTGGGCTGTACCTCAAGATTGGTTATTACGCCTCTCACAGACCGATGCTGGCTGACTCTCATGGAAGCACTACACTTGAATCTAGGAGGCTGTCCTGCCGGTCCAGCTGGTACAGGAAAAACTGAGACTGTCAAAGATCTAGCAAAA
Seq C2 exon
GTTTGTACTGGAAGGAAAAGAAATTCGTATCAATATGTCTTGTGCGGTATTTATCACCATGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX6-7/9=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(22.2=33.3)
A:
PF127742=AAA_6=PU(22.7=67.9)
C2:
PF127742=AAA_6=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTAAGTCAAGGGATTGAAGACT
R:
TGGGATTCATGGTGATAAATACCGC
Band lengths:
156-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)