HsaEX6037023 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225311229-225332330:+
Coord C1 exon
chr1:225311229-225311316
Coord A exon
chr1:225328470-225328723
Coord C2 exon
chr1:225332099-225332330
Length
254 bp
Sequences
Splice sites
3' ss Seq
ACATTATCTTACTTTTTCAGAGC
3' ss Score
10.68
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATTTTTAAGTCAAGGGATTGAAGACTGGAACTGCCAGATGTTTTCCCAATGGGTGTTATCTCATCCAGGACAAGTGGTACTTACTGTG
Seq A exon
AGCCAGATCATGTTTTATAATGATTGTGTTAAAAGTTTTGTGAGTTCTTATTCAAGAGAAAAATTGGAAAAAGTCCACGCTGGTCTGATGTGTCATCTAGAAGAGGTTGCAGACCTGGTAGTGCTGGATACTAGTAACTCTCGAACAAAAGCTATACTAGGGGCATTGCTTATCCTTTATGTTCACTGCAGAGATATAGTGATAAATTTACTACTTAAAAATATCTTCAATGCAGAGGATTTTGAGTGGACAAG
Seq C2 exon
ACATTTGCAATATAAATGGAATGAAAAACAAAAGTTGTGCTATGTGTCTCAAGGAAATGCCAGCTTTACTTATGGCTATGAGTACTTGGGCTGTACCTCAAGATTGGTTATTACGCCTCTCACAGACCGATGCTGGCTGACTCTCATGGAAGCACTACACTTGAATCTAGGAGGCTGTCCTGCCGGTCCAGCTGGTACAGGAAAAACTGAGACTGTCAAAGATCTAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'44-50,'44-49,45-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(22.2=33.3)
A:
PF083938=DHC_N2=PD(24.1=15.3)
C2:
PF127742=AAA_6=PU(22.7=67.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTGAAGACTGGAACTGCC
R:
GACAGTCTCAGTTTTTCCTGTACCA
Band lengths:
292-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)