MmuEX7000646 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181643542-181651201:+
Coord C1 exon
chr1:181643542-181643629
Coord A exon
chr1:181648229-181648482
Coord C2 exon
chr1:181650970-181651201
Length
254 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCTTTTTTTCTCAGATC
3' ss Score
11.65
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATTTATAATTCAAGGTATTGAAGACTGGAAATACCATACTTTTTCCGACTGGGTCATGTCACATCCCGGGCAAGTGGTCATCACTGTG
Seq A exon
ATCCAGATTATGTTTTATAATGACTGTTTGAAAGGTTTTATGAGTTATAATCCAAGAGAAATTCTAGAGGCAGTCCAAGCCCGTTTGCTGCGTCATCTGGAAGATATTGCGGTGCTGGTCACACTGAATACTAGCAACCAGCGCACGAAAACCATGCTGGCAGCAACACTGATCATCTGTGTCCACTGCAGAGACATCATGTCGGATGTGCTAGTTAAGAAGATCTTCAGCATCCAGGACTTTGAGTGGACCAG
Seq C2 exon
ACATTTGCGGTATAAATGGAATGGGAAGCAGAAACTGTGTTACGTTCTTCAAGCAAACACCAGCTTTGTTTATGGCTATGAGTACTTGGGTTGTGCTCCGAGGCTGGTCATCACTCCCCTCACAGAAAGATGCTGGCTCTCTCTCTCTGAGGCACTGTACTTCAACCTGGGAGGCTGCACTGCTGGGCCTGCAGGTACAGGAAAAACTGAGACTGTTAAGGACCTAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'28-39,'28-31,31-39=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.4=33.3)
A:
NO
C2:
PF127742=AAA_6=PU(23.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATACCATACTTTTTCCGACTG
R:
TGCTAGGTCCTTAACAGTCTCAGT
Band lengths:
292-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types