HsaEX6037023 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225123527-225144628:+
Coord C1 exon
chr1:225123527-225123614
Coord A exon
chr1:225140768-225141021
Coord C2 exon
chr1:225144397-225144628
Length
254 bp
Sequences
Splice sites
3' ss Seq
ACATTATCTTACTTTTTCAGAGC
3' ss Score
10.68
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATTTTTAAGTCAAGGGATTGAAGACTGGAACTGCCAGATGTTTTCCCAATGGGTGTTATCTCATCCAGGACAAGTGGTACTTACTGTG
Seq A exon
AGCCAGATCATGTTTTATAATGATTGTGTTAAAAGTTTTGTGAGTTCTTATTCAAGAGAAAAATTGGAAAAAGTCCACGCTGGTCTGATGTGTCATCTAGAAGAGGTTGCAGACCTGGTAGTGCTGGATACTAGTAACTCTCGAACAAAAGCTATACTAGGGGCATTGCTTATCCTTTATGTTCACTGCAGAGATATAGTGATAAATTTACTACTTAAAAATATCTTCAATGCAGAGGATTTTGAGTGGACAAG
Seq C2 exon
ACATTTGCAATATAAATGGAATGAAAAACAAAAGTTGTGCTATGTGTCTCAAGGAAATGCCAGCTTTACTTATGGCTATGAGTACTTGGGCTGTACCTCAAGATTGGTTATTACGCCTCTCACAGACCGATGCTGGCTGACTCTCATGGAAGCACTACACTTGAATCTAGGAGGCTGTCCTGCCGGTCCAGCTGGTACAGGAAAAACTGAGACTGTCAAAGATCTAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-25/72=24-26
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(20.0=33.3)
A:
PF083938=DHC_N2=PD(24.1=15.3)
C2:
PF127742=AAA_6=PU(23.0=67.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTGAAGACTGGAACTGCC
R:
GACAGTCTCAGTTTTTCCTGTACCA
Band lengths:
292-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains