HsaEX6037025 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:224967431-225346654:+
Coord C1 exon
chr1:224967431-224967583
Coord A exon
chr1:225085544-225085789
Coord C2 exon
chr1:225346456-225346654
Length
246 bp
Sequences
Splice sites
3' ss Seq
GAATACTTTGTTCATTTTAGATG
3' ss Score
7.77
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAACCTTTGGAAGATGATGGAGAATTTGTTTATTGCCTTCCTCGGAAAAGTCCTAAATCCCTTTACAATCCATATGATCTTCAGGTAGTATCGGCTCATACTGCTAAACATTGCAAAGAATTTTGGGTTATTACTGCTTCATTTATCTCAAAG
Seq A exon
ATGTTTCAGTATGAAAATGAAATAAATGATATGTCAACCTCAGCAACTAATGAAGCTGCTCTTGAAAAAATGCTATTTAAGATTATTGATTTTTGGAACACTACTCCTTTGCCTTTAATTCTTCACCACACAGAGATTTACTCTATCTTCATAATTCCATCTATAGATGACATATCAGCTCAGTTAGAAGAGTCTCAAGTCATACTTGCAACAATTAAAGGATCTCCCCACATTGGGCCCATTAAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-17/72=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=FE(19.9=100)
C2:
NO
Main Skipping Isoform:
ENST00000445597fB13961
Other Skipping Isoforms:
NA
Associated events
- HsaALTA0002553-1/3
- HsaALTA0002553-3/3
- HsaEX0020122
- HsaEX0020123
- HsaEX0020127
- HsaEX0020129
- HsaEX0020130
- HsaEX0020131
- HsaEX0020132
- HsaEX0020133
- HsaEX0020136
- HsaEX0020137
- HsaEX0020138
- HsaEX0020139
- HsaEX0020140
- HsaEX0020141
- HsaEX0020142
- HsaEX0020143
- HsaEX0020144
- HsaEX0020145
- HsaEX0020146
- HsaEX0020147
- HsaEX0020148
- HsaEX0020149
- HsaEX0020150
- HsaEX0020151
- HsaEX0020152
- HsaEX0020155
- HsaEX0020156
- HsaEX0020157
- HsaEX0020158
- HsaEX0020159
- HsaEX0020160
- HsaEX0020161
- HsaEX0020162
- HsaEX0020163
- HsaEX0020164
- HsaEX1011893
- HsaEX1011894
- HsaEX1011895
- HsaEX1011897
- HsaEX1011898
- HsaEX6036998
- HsaEX6037000
- HsaEX6037002
- HsaEX6037003
- HsaEX6037004
- HsaEX6037005
- HsaEX6037006
- HsaEX6037007
- HsaEX6037008
- HsaEX6037010
- HsaEX6037011
- HsaEX6037012
- HsaEX6037014
- HsaEX6037016
- HsaEX6037017
- HsaEX6037018
- HsaEX6037019
- HsaEX6037020
- HsaEX6037021
- HsaEX6037022
- HsaEX6037023
- HsaEX6037024
- HsaEX6037026
- HsaEX7000842
- HsaINT0049482
- HsaINT1011372
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGAAAAGTCCTAAATCCCT
R:
AGTCTAGACTGGGATAATGCACT
Band lengths:
308-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains