HsaEX6037012 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225275914-225290082:+
Coord C1 exon
chr1:225275914-225276081
Coord A exon
chr1:225277410-225277502
Coord C2 exon
chr1:225289885-225290082
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTCACATTTGATCTGCTAGCTT
3' ss Score
5.02
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
ATTCAGTGGACCCAAGAAAACCTGATGAATCACTCAACTGTATTTTTGGACTTCTTGGATATAAACAAGACTCATAGAAAAAAGATTTATCAGAATACCAGTGACTATAATAAACTTGCCAGTGTACTTGATGAATTCCAAATGAAGTTGGGTTCAATTTCTTTGGAG
Seq A exon
CTTTCTCATTCCATGGTGTTCTTCAAGGAAGCCATAGAACACATCATAAGAGCAACAAGGGTTCTTCGACAACCAGGGAGTCACATGTTACTG
Seq C2 exon
ATTGGAATAGATGGATGTGGGAAAAAAACATGTGCAACCTTGGCCTGTTATTTGACAGATAATAAACTATACCGAGTGCCTATATCTCACAAATGTGCCTACATCGAATTCAAAGAAGTCTTTAAAAAGGTGTTTATTCACGCAGGATTAAAAGGGAAACCCACTGTTCTGATGGTTCCCAATTTAAACATAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'102-136,'102-135,103-136
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.5=33.3),PF127802=AAA_8=PU(0.4=1.8)
A:
PF127802=AAA_8=FE(11.6=100)
C2:
PF127802=AAA_8=FE(24.7=100)
Main Skipping Isoform:
ENST00000430092fB13964
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTGTATTTTTGGACTTCTTGGA
R:
AGGCCAAGGTTGCACATGTTT
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains