HsaEX6037012 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225463616-225477784:+
Coord C1 exon
chr1:225463616-225463783
Coord A exon
chr1:225465112-225465204
Coord C2 exon
chr1:225477587-225477784
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTCACATTTGATCTGCTAGCTT
3' ss Score
5.02
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
ATTCAGTGGACCCAAGAAAACCTGATGAATCACTCAACTGTATTTTTGGACTTCTTGGATATAAACAAGACTCATAGAAAAAAGATTTATCAGAATACCAGTGACTATAATAAACTTGCCAGTGTACTTGATGAATTCCAAATGAAGTTGGGTTCAATTTCTTTGGAG
Seq A exon
CTTTCTCATTCCATGGTGTTCTTCAAGGAAGCCATAGAACACATCATAAGAGCAACAAGGGTTCTTCGACAACCAGGGAGTCACATGTTACTG
Seq C2 exon
ATTGGAATAGATGGATGTGGGAAAAAAACATGTGCAACCTTGGCCTGTTATTTGACAGATAATAAACTATACCGAGTGCCTATATCTCACAAATGTGCCTACATCGAATTCAAAGAAGTCTTTAAAAAGGTGTTTATTCACGCAGGATTAAAAGGGAAACCCACTGTTCTGATGGTTCCCAATTTAAACATAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'80-86,'80-85,81-86=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.5=33.3),PF127802=AAA_8=PU(0.4=1.8)
A:
PF127802=AAA_8=FE(11.6=100)
C2:
PF127802=AAA_8=FE(24.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTGTATTTTTGGACTTCTTGGA
R:
AGGCCAAGGTTGCACATGTTT
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)