MmuEX1008658 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181725386-181734970:+
Coord C1 exon
chr1:181725386-181725553
Coord A exon
chr1:181726409-181726501
Coord C2 exon
chr1:181734773-181734970
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGCTATATTTCTTTTGCCAGATG
3' ss Score
8.63
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
ATTTACTGGAGTCACGAGAGACTGATGAACAAGCCAGTCCTATTTGTGGACTTCATGGATATAAACAAGCCTCACCGGAAAAGGGTCTACCAGAACACCGATAACTACAATGAACTTTTGAGCATCCTTACCAAATTCCAACAGAAGTTGAGTTCATCATCTCTGGAG
Seq A exon
ATGTCTCATTCAGTTGTATTCTTCAAGGAAGCTATAGATCATATTACAAGAACTACCAGAGCCCTTCGACAGTCAGGGAGTCACATGTTACTG
Seq C2 exon
CTGGGAATTGACGGCTGCGGGAAGGAAACATATGCAACCATAGCCTGCTACTTGGCAGAATACAAAGTATGCAAAGTGCCTATCTCTCACAACTACGCCATCTCAGAGTTCAAAGAAATGTTTAAAAAGGTGTTTATTCAAACAGGCTTGGAAGAGACCCCCACGGTTGTCATGGTGACCAACTTACAAGAAGAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'64-66,'64-65,65-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(3.1=12.5),PF127802=AAA_8=PU(0.7=3.6)
A:
PF127802=AAA_8=FE(11.2=100)
C2:
PF127802=AAA_8=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGAACAAGCCAGTCCT
R:
ATATGTTTCCTTCCCGCAGCC
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types