HsaEX0020149 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225038694-225043789:+
Coord C1 exon
chr1:225038694-225038823
Coord A exon
chr1:225042835-225043114
Coord C2 exon
chr1:225043744-225043789
Length
280 bp
Sequences
Splice sites
3' ss Seq
CACATTATCCGTTAAATTAGATT
3' ss Score
3.51
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AACATTCAAGGACAACTCTTTTCCTACTGGAAAGACAACAAATGATTGTGAAGAACTTGTTGATAATTCAAAGTTACATGCTATTTCTGTTCAAAAGTCAGAAGTAAAAACAGACACTGATATTAATGAG
Seq A exon
ATTTTGAATAGTGTTGAAGTGGGGAAGGATTTGAGAAAAACATATGCACCAATATTTGAAGTAAATCTATGCTTGAGAATTCCTGCTGAGAGTGATTCTTCAGAAAATTCTAAAGAGAACTTTCATGAGTCTGACCAGTGCCCTGAAGAGTGTGTGATGTTTGAAGATGAAATGTCAGAAAATAAAGACAATTGTGTCAAAAAACACTCAAGTGAAGAATTGCTCCCAAAAGCCAAGAAATCAAAAGAAATTAGTTACAATCTTGAAGATATTATTTCAG
Seq C2 exon
ACACAGAAATTGAGACTGAGTTTGAGAATAAATACATGTATTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'37-50,'37-49,38-50
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.168 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAAGGACAACTCTTTTCCT
R:
TCTCAAACTCAGTCTCAATTTCTGTG
Band lengths:
156-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development