HsaEX0020149 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225226396-225267250:+
Coord C1 exon
chr1:225226396-225226525
Coord A exon
chr1:225230537-225230816
Coord C2 exon
chr1:225266909-225267250
Length
280 bp
Sequences
Splice sites
3' ss Seq
CACATTATCCGTTAAATTAGATT
3' ss Score
3.51
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AACATTCAAGGACAACTCTTTTCCTACTGGAAAGACAACAAATGATTGTGAAGAACTTGTTGATAATTCAAAGTTACATGCTATTTCTGTTCAAAAGTCAGAAGTAAAAACAGACACTGATATTAATGAG
Seq A exon
ATTTTGAATAGTGTTGAAGTGGGGAAGGATTTGAGAAAAACATATGCACCAATATTTGAAGTAAATCTATGCTTGAGAATTCCTGCTGAGAGTGATTCTTCAGAAAATTCTAAAGAGAACTTTCATGAGTCTGACCAGTGCCCTGAAGAGTGTGTGATGTTTGAAGATGAAATGTCAGAAAATAAAGACAATTGTGTCAAAAAACACTCAAGTGAAGAATTGCTCCCAAAAGCCAAGAAATCAAAAGAAATTAGTTACAATCTTGAAGATATTATTTCAG
Seq C2 exon
GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-7/14=6-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.165 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGACAACTCTTTTCCTACTGG
R:
TGGATCTGGTGATGCTTTGCA
Band lengths:
292-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)