HsaEX0020140 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225231588-225239497:+
Coord C1 exon
chr1:225231588-225231685
Coord A exon
chr1:225237912-225238078
Coord C2 exon
chr1:225239153-225239497
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTATATATTTTAGCCA
3' ss Score
6.03
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
ATTTCCAGAATTTCCTACAAATCTCTTTATAGATCCCAACAGATTGGAGTTTTCAGTAAAAATTCAAAATATGTTGACTAATATGGAAAAATGTATAA
Seq A exon
CCACAATTACTCCTCTTTGCCAAGATCCCCAGCTGTCTATCTTCATTGATTTGGTTTCAATAATGGATTTACCTAATAAGACAGGAAGCATAATACATTATAAAGAGCAGACCAGATGGCCAGATTGTCACATCCTTTTTGAAACAGATCCTGCCTACCAAAATATA
Seq C2 exon
ATTGTGAATCTCCTGACTATTATTGGTAATTCAATGGGCCTAGTTAATGCTTACAGCCACAAGTTTATAAAGTATTGTACCATGACAGAAAAGGCCAAAATCATGAGTATGAAAATATCATCTATGGGAGAATTAACTTCAAAAGAATTTGAAGCTATTCTAAATAGATTCAGAAACTATTTTAGACATATTGTGAATATGGCCATTGAGAAGCGTATTGGTATTTTCAACGTTGTAAGTCTTGATTATCAATCAGAATGCTTACTGTATATTGACAACGTCATACATATGAGCCACACCCTCATACAATCTGTAATTGAAAAAAAGAACAAAAATTTATTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-10/14=9-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGATTGGAGTTTTCAGTAAAAA
R:
TCAATGGCCATATTCACAATATGTCT
Band lengths:
271-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)