HsaEX0020150 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225230537-225267250:+
Coord C1 exon
chr1:225230537-225230816
Coord A exon
chr1:225231446-225231491
Coord C2 exon
chr1:225266909-225267250
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTTTCAATGGATTCTAATAGACA
3' ss Score
3.16
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
ATTTTGAATAGTGTTGAAGTGGGGAAGGATTTGAGAAAAACATATGCACCAATATTTGAAGTAAATCTATGCTTGAGAATTCCTGCTGAGAGTGATTCTTCAGAAAATTCTAAAGAGAACTTTCATGAGTCTGACCAGTGCCCTGAAGAGTGTGTGATGTTTGAAGATGAAATGTCAGAAAATAAAGACAATTGTGTCAAAAAACACTCAAGTGAAGAATTGCTCCCAAAAGCCAAGAAATCAAAAGAAATTAGTTACAATCTTGAAGATATTATTTCAG
Seq A exon
ACACAGAAATTGAGACTGAGTTTGAGAATAAATACATGTATTATGA
Seq C2 exon
GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-8/14=7-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.165 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGAATTGCTCCCAAAAGCC
R:
TGCTCCAGAAATTCTTCTATTTCAGT
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)