MmuEX1008653 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181615834-181616822:+
Coord C1 exon
chr1:181615834-181616098
Coord A exon
chr1:181616593-181616638
Coord C2 exon
chr1:181616725-181616822
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTTTCAATAAATTCGAATAGACT
3' ss Score
1.3
5' ss Seq
TAAGTACGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
ACTTTTAACAGTCATCGTGTGGCAATGGATTTGAAGAAAACCTATGCTCCAATATTTGAGATCAGCCTCTGTCTGAGACTTCCCACTATGAATGACTCTCCAGAGGACCTGGAAGGGAATAATCAGAAGTCTGAGAACTGTGAAGAGTCTCTGGTGTGTGATGAGGAGGAACTGGAGAACCGAAAAAGAACTTCAAGTGAAGCCATGCTCAGCCAGTACAACCAGCCGAGCAAGTTTGGCACCCTCCTGAAACGCATCCTTTCAG
Seq A exon
ACTCAGGACTCCAGCTTGAGTCTGATCAAGAACGCTTCTATAATAA
Seq C2 exon
ATTTTTTGAATTCCCAACAAACCTCTTTATGGAACCCAACAGACTGGACTTTTCGACACAATTCCAAAATATGATAGCAACTATAGAAAAGTATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTGAAGCCATGCTCAGC
R:
TGTGTCGAAAAGTCCAGTCTGT
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types