HsaEX0020142 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225239153-225270441:+
Coord C1 exon
chr1:225239153-225239497
Coord A exon
chr1:225266909-225267250
Coord C2 exon
chr1:225270251-225270441
Length
342 bp
Sequences
Splice sites
3' ss Seq
AATTGACATGTTGATTTCAGGTT
3' ss Score
6.03
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATTGTGAATCTCCTGACTATTATTGGTAATTCAATGGGCCTAGTTAATGCTTACAGCCACAAGTTTATAAAGTATTGTACCATGACAGAAAAGGCCAAAATCATGAGTATGAAAATATCATCTATGGGAGAATTAACTTCAAAAGAATTTGAAGCTATTCTAAATAGATTCAGAAACTATTTTAGACATATTGTGAATATGGCCATTGAGAAGCGTATTGGTATTTTCAACGTTGTAAGTCTTGATTATCAATCAGAATGCTTACTGTATATTGACAACGTCATACATATGAGCCACACCCTCATACAATCTGTAATTGAAAAAAAGAACAAAAATTTATTGGAA
Seq A exon
GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAG
Seq C2 exon
GTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCAGGAGATTATTGGGAAGTCAGTTCCGCTTGATAAAAACTGTAAAGTAGAGAATCTTCTAGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-12/14=11-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=FE(15.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCATGACAGAAAAGGCCA
R:
CCCAGAGCTATAATGATAGGCAGC
Band lengths:
355-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)