MmuEX7000650 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181622693-181628237:+
Coord C1 exon
chr1:181622693-181623037
Coord A exon
chr1:181626641-181626982
Coord C2 exon
chr1:181627868-181628237
Length
342 bp
Sequences
Splice sites
3' ss Seq
TAGTGTGCTAATCCTTGCAGACT
3' ss Score
5.47
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATTGTGACTCTGCTGACTATTATTGGTAATTCAGTGGGCTTGGTTAGCGACTACAGCTGCAGGTTTCTGAAATATTGTTACATAGTAGAAAAGGCCAAAGTCATGACTACAAAACTGCCATTCATGACGAACTTGACATCCATCGAGTTTAAAAGAATAATACATAAATTCAGAAGCTACCTAAAGCAAATCGTGACCATGACTATTGAGATACGTATTGGAATTTTTTATGTGAATAGTCTGGATTATCAATTAGCATGCTTACCATATGTTGATGGCATCATACAAATGAGCTACAACCTGTTACAATGTACCATTGAGGAAAAAAGTGCAAATCTATTAGAA
Seq A exon
ACTTTAGACTCGTTGCTGCACCAACTGGACACTGAGCCCGTGGAACTGGAAGAATTTGTGGAGCATTTGAATTTTTTGGATGACATTTTCTCGAGCTTGACTGAAATAGAAAAGGATTTCTGCACAATTTCTGAGCTGTATTCCATTGTGAGGCATTACCAGATCAATGTGTCAGAAGAGCAGATCGCCATCTACAAAATCATCTTCATGAAGTTCAATCATCTAAAAACATCCATGAAGTTTGTCGCCATGAATAGAGAAACCAGTCTCACTAAATTCAAGAACGGTTTGGAAGCATATATTGTCAGCCTACGAGTGGATGTCAGTAACTTAAAAGATAAG
Seq C2 exon
ATAAGAACTCCTCTCCTGCTGGCCGCCAGTACTCCAATACCAAAAGCCAAGGAAATCGTGCAGTCTCTCGAAGCAGAAGCTGAAAGCTTGACTCTAAAAGTGAAAACCTACTCAAACTACCAGAACTACTATGATCAAGCCTATTTCCGTATGAATGCTATCAACACGAACGAGATGAGTCATATAGTGTTGTCAGAAATCTCCGAAATTGAGTGTGACCTGATGCTGAGGAAATTATTATGGGAAGCGCAAGAAGAGTGGGGGAAATATTTCTGGGAATGGAGGAACTGTACTCTCCAAAGCATTGATATCGATTTAGTGAAGAACAACGTCTCCAAGTGGCTGCATATAATCATTGTACTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'10-24,'10-17,20-24=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(14.3=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGCGACTACAGCTGCAGG
R:
TATTGGAGTACTGGCGGCCA
Band lengths:
342-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types