HsaEX0020142 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225051451-225082739:+
Coord C1 exon
chr1:225051451-225051795
Coord A exon
chr1:225079207-225079548
Coord C2 exon
chr1:225082549-225082739
Length
342 bp
Sequences
Splice sites
3' ss Seq
AATTGACATGTTGATTTCAGGTT
3' ss Score
6.03
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATTGTGAATCTCCTGACTATTATTGGTAATTCAATGGGCCTAGTTAATGCTTACAGCCACAAGTTTATAAAGTATTGTACCATGACAGAAAAGGCCAAAATCATGAGTATGAAAATATCATCTATGGGAGAATTAACTTCAAAAGAATTTGAAGCTATTCTAAATAGATTCAGAAACTATTTTAGACATATTGTGAATATGGCCATTGAGAAGCGTATTGGTATTTTCAACGTTGTAAGTCTTGATTATCAATCAGAATGCTTACTGTATATTGACAACGTCATACATATGAGCCACACCCTCATACAATCTGTAATTGAAAAAAAGAACAAAAATTTATTGGAA
Seq A exon
GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAG
Seq C2 exon
GTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCAGGAGATTATTGGGAAGTCAGTTCCGCTTGATAAAAACTGTAAAGTAGAGAATCTTCTAGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-14/72=12-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=FE(15.4=100)
Main Skipping Isoform:
ENST00000445597fB13961
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCATGACAGAAAAGGCCA
R:
CCCAGAGCTATAATGATAGGCAGC
Band lengths:
355-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development