HsaEX1011894 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225043886-225079548:+
Coord C1 exon
chr1:225043886-225043983
Coord A exon
chr1:225072736-225072895
Coord C2 exon
chr1:225079207-225079548
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTTCCTTAACAGTCT
3' ss Score
10.45
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTTCCAGAATTTCCTACAAATCTCTTTATAGATCCCAACAGATTGGAGTTTTCAGTAAAAATTCAAAATATGTTGACTAATATGGAAAAATGTATAA
Seq A exon
TCTGGCCACTTTTCTGTAGGTCTGCTTGTGGTATGCTGGGGGTCCACTGCAGTTTCTAGTTGCCTTGGATTTTCCAGTATTTGGAGTTATCGTCAGTGAAGTCTGTGAAGCAGCTAAGATGCCAGCCTGCCCCTTCTCCTGGGAGTGCCATCCCAGGGAG
Seq C2 exon
GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-13/72=10-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000445597fB13961
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATCTCTTTATAGATCCCAACAG
R:
TGGATCTGGTGATGCTTTGCA
Band lengths:
249-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains