HsaEX0020143 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225266909-225270441:+
Coord C1 exon
chr1:225266909-225267250
Coord A exon
chr1:225268081-225268450
Coord C2 exon
chr1:225270251-225270441
Length
370 bp
Sequences
Splice sites
3' ss Seq
GTCCTACTCTTATTTTTTAGATA
3' ss Score
10.42
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAG
Seq A exon
ATAAGAACTCCTCTTCTGTTATGTGCTGGTACTCAAGTGTCAACAGCAATGGAAATGATCCAGACTCTCTCAGGGGAAGCTGCAAGTTTAACTAACAAAGCTAAAGCATATTCACATTATCAGGATTGTTTCAGTGATTCTCAATCTCATATGCATTCTGTTAATGTGGAAGAAATTACACAGATTGTGCTTTCAGAGATCTCTGACATTGAAGGTGACTTGACTTTGAGGAAAAAACTATGGGAAGCACAAGAGGAGTGGAAGCGAGCCTCTTGGGAATGGAGGAATAGTTCTCTTCAAAGTATTGATGTAGAATCAGTACAGAGAAATGTTTCAAAACTGATGCACATAATCTCGGTACTAGAAAAAG
Seq C2 exon
GTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCAGGAGATTATTGGGAAGTCAGTTCCGCTTGATAAAAACTGTAAAGTAGAGAATCTTCTAGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-13/14=12-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(90.8=47.6),PF083938=DHC_N2=PU(3.7=1.6)
C2:
PF083938=DHC_N2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGCATCACCAGATCCA
R:
CAAGCGGAACTGACTTCCCAA
Band lengths:
349-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)