HsaEX6037019 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225231073-225252417:+
Coord C1 exon
chr1:225231073-225231151
Coord A exon
chr1:225240593-225240822
Coord C2 exon
chr1:225252301-225252417
Length
230 bp
Sequences
Splice sites
3' ss Seq
TCCATACCTGTCTACCCCAGGGA
3' ss Score
7.98
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTGATGATTTGAATGACACGTCATCTAAGGAGGCAAATTCCCAAAGAGAGTCTGTCACATTCAAGGATATAGAAAAGAG
Seq A exon
GGATGAAAATACATGGTATCCAGAGAAAAATCCTGATAAATTAACAAAAATTATTCAAAAGCTTTTTGTGTTTGCCTTTACTTGGGCATTTGGAGGAGCTTTAAACCGTGAAGATGAACACAGAGAAAATATACCATTTTGTCCCAGTCTTGAACCTGATTCTCTTGCAAAAGTAACATACGATTTTGACAAACTTGTTCATGAATTATTTGGAAACAGTTCACAAGTAG
Seq C2 exon
GCATCAACCTACCAACTGGTGAATGTTCCATCTTTGGATATTTTGTGGATATAGAGCAATGTGAATTCATACCTTGGTCAGATTTAGTTCCTAATGATCAGACACTAATTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-42/72=41-44
Average complexity
C2
Mappability confidence:
97%=98=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.044 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGATTTGAATGACACGTCA
R:
TGAATTAGTGTCTGATCATTAGGAAC
Band lengths:
191-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains