MmuEX1008672 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181694214-181702482:+
Coord C1 exon
chr1:181694214-181694283
Coord A exon
chr1:181696501-181696739
Coord C2 exon
chr1:181702324-181702482
Length
239 bp
Sequences
Splice sites
3' ss Seq
TGGCTGCCTTTCCGTCACAGCCA
3' ss Score
8.01
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTCATGAAGCAATGGACAGTGAGTCCCCTACAGAGACAAAGGTGAAAGTGAAGTTCAAGGAGGAAACGAG
Seq A exon
CCACCACAAGGATGAGGGGTCATGGTTCCTTGAGAGAAACCCTGAGAAGCTTCCAATGATGATCCAAAAGATCTTTGTTTTTGCATTCACATGGGCATTTGGAGGGATTTTAAAGCGTGAAGACCAACATGAAGAAGACATACTGTTCCGTAAAAGCTTTGAACATGACTCCCTTGCAGAAGTAAACTACAATTTTGACATCTTTGTCCGTGAAGTATTTGAAGATGATTCAGAAAGAG
Seq C2 exon
AGACGTCGCTGCTGACTGACTTCCAGGGATCTAGTGAGAACGTGCTGAGGATGAACGAGTATGGGGAGTGCGTGAACTACATGGCTACGAGAGACACCATCTGCCTCTCTTTCCTCATGAGCCTTTTCCTCAGGAACTCCTACCCTGTACTTCTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX3-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(51.7=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAAGCAATGGACAGTGAGT
R:
CCGTGAGAAGTACAGGGTAGGA
Band lengths:
228-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types