HsaEX6037006 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225308285-225346654:+
Coord C1 exon
chr1:225308285-225308410
Coord A exon
chr1:225318583-225318677
Coord C2 exon
chr1:225346456-225346654
Length
95 bp
Sequences
Splice sites
3' ss Seq
GACCTATATTTTTATTGCAGAAA
3' ss Score
8.17
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAAACAGAAACTCTAATGGAAAAACTACGGAAAGATTCACAAGTAGTTGAGAAAGTTCAGATGCTTGTTAAACAGGATGAAGAAATTGTGGCAGAAGAAGTAAGAATTGTGGAAGATTATGCTCAG
Seq A exon
AAAACTGCCAATGAACTAAAAAGTGTGCTGCCAGCCTTTGACAAGGCAATTGTGGCTCTGAATGCCCTGGATAAAGCTGATGTCGCTGAATTAAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-62/72=61-C2
Average complexity
C3
Mappability confidence:
98%=98=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(14.1=100)
A:
PF127772=MT=FE(10.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAAGATTCACAAGTAGTTGAGA
R:
GCATGATTACAGTGCAAAGCCG
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains