HsaEX6037000 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225337266-225346654:+
Coord C1 exon
chr1:225337266-225337496
Coord A exon
chr1:225338061-225338182
Coord C2 exon
chr1:225346456-225346654
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATTGGGTTTTTCAGAAT
3' ss Score
8.13
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATCAGCCGATGGCATAATCAGGGACTGCCTCATGGTCAGTATTCAGTAGAGAATGCCATCTTGATCAAGAATGGCCAGCAGTGGCCACTGCTGATTGACCCACATAGGCAAGCTCACAAATGGATCCGTCAGATGGAAGGATCCAGGCTGCAGAAGCTCTCCATTGAAGACAGCAATTATACCAAAAAAATTGAAAATGCTATGAAGACAGGAGGGAGTGTCCTCCTGCAG
Seq A exon
AATCTCCTTGAGACATTAGCTCCAGGCTTAAAGGCAATTCTGAAAAAGGATATCTATCAGAAAAAAGGACACTATTTCATAAGGGTTGGTGATGCTGAGTTCGAATACAATTCAAATTTTAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-70/72=69-C2
Average complexity
C2
Mappability confidence:
98%=97=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(3.7=14.1),PF127812=AAA_9=FE(33.5=100)
A:
PF127812=AAA_9=FE(17.4=100)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGATCAAGAATGGCCAGCA
R:
GCATGATTACAGTGCAAAGCCG
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains