HsaEX0020133 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225331437-225346654:+
Coord C1 exon
chr1:225331437-225331577
Coord A exon
chr1:225333291-225333506
Coord C2 exon
chr1:225346456-225346654
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATTTCTATTTTAACATTTAGACT
3' ss Score
6.46
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTGAAGAACATTTGCTGTTTTTACAGGCAGCTTACAAAGATACCGTTGCTGAAAAACAACTATTAGCAAATCGGAAAACAATGGCCAGCAGGCGCTTTCAGTGTGCGTCAGTCTTACTAACTGTCCTGGAAGATGAGAAG
Seq A exon
ACTCGATGGCAAGAAACAATCAATCAAATAGATAACAAATTAGAAGGAATTTTGGGTGACATACTTCTTTCAGCAGCGTGCATTGTCTACAGTGGAATTTTAACACCAGAATTTCGCCAGTTGATTGTGAATAAATGGGAGACATTCTGCATTGAAAATGGCATTTCTTTGTCTTCCAAATTCTCTTTAATTAAAGTTATGGCACAAAAATATGAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-68/72=66-C2
Average complexity
C2
Mappability confidence:
98%=99=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.8=100),PF127812=AAA_9=PU(2.6=12.5)
A:
PF127772=MT=PD(14.6=68.1),PF127812=AAA_9=PU(2.6=8.3)
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTACAAAGATACCGTTGC
R:
AGTCTAGACTGGGATAATGCACT
Band lengths:
308-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development