MmuEX6029761 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181755243-181763476:+
Coord C1 exon
chr1:181755243-181755383
Coord A exon
chr1:181757192-181757407
Coord C2 exon
chr1:181763246-181763476
Length
216 bp
Sequences
Splice sites
3' ss Seq
AATCATATCTTGACACTCAGATC
3' ss Score
4.04
5' ss Seq
GAGGTAGTA
5' ss Score
4.45
Exon sequences
Seq C1 exon
ATTGAAGATCATCTGCAGTTCCTGCACACGTCCTACAGAGACATTGTTACTGAAAAGCATCAACTGGCGTCTCGGAAAAAGCTGGCCACCAAGCGCCTCCAGTGCGCATCCGTCCTGCTGACCGTCCTGGAGGACGAGAAG
Seq A exon
ATCCGATGGCAAGAAACGATCAACGAGATAGACTGCAAGCTGAAAGGCGTCTGTGGTGACACATTCCTTTCATCCGCATGCCTCGCCTACATCGGAGTCTTAACGCCAGAGTTCCGAGAGCTGGTGATTCAGAAATGGAAAGACTTCTGCACTCGGGCAGAAATCATCTTGTCACCCAATTTTTCCTTAATTGACGTGATGGCAGAAAAAAATGAG
Seq C2 exon
ATTCGCCGGTGGCATAATCAAGGGCTGCCTCTTGGGCAGCATTTGGCAGAAAATGCCATTTTGATGAAAAGGACAAAGCAGTGGCCACTGGTGATCGACCCGCACAAGCAAGCACTCCACTGGATCCGCCAGATGGAAGGGCCCAGGCTGCAAGAGATTTCTGCTCAAGATAGCAATTACACCAAAAAACTGGTGATTGCCATGCAAGCAGGAGACCCTGTCCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'72-93,'72-82,82-93=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.7=100)
A:
PF127772=MT=PD(14.6=68.1),PF127812=AAA_9=PU(2.6=8.3)
C2:
PF127812=AAA_9=FE(33.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGCACACGTCCTAC
R:
GAGCAGAAATCTCTTGCAGCCT
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types