BtaEX0012224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29060264-29068002:+
Coord C1 exon
chr16:29060264-29060404
Coord A exon
chr16:29064131-29064346
Coord C2 exon
chr16:29067772-29068002
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTTTTTACTTGAACGTTTAGACT
3' ss Score
4.94
5' ss Seq
GAGGTAGTA
5' ss Score
4.45
Exon sequences
Seq C1 exon
GTTGAAGAACATCTTCAGTCTTTGCAAGAAGCCTACAAAGAGATTGTTGCTGAAAAAGAACTATTAGCCCATCGAAGAAAACTGGCCACCAAGCGCCTACAGTGTGCATCTATCTTACTAACTGCCTTGGAAGATGAGAAG
Seq A exon
ACTCGATGGCAAGAAACAATTGATCAAATAGACAACAAGTTGGAAGGAATTTGGGGTGACATACTTATTTCAGCAGCATGCATTGTCTACAGTGGAGTGTTAACAGCAGAATTTCGCCAATTGATTGTGGAAAAGTGGCAGAATCTTTGTACTGAAAACAACATTTCTTTGTCTTCTAACTTTTCTTTAATTGAAGTCATGGCACAAAAACATGAG
Seq C2 exon
ATCCGCCAATGGCATCAACAGGGACTTCCTCTTGGTCAGTATTCAACAGAGAATGCCATCTTGATCAAGAATGGCCTGCAGTGGCCACTGCTGATTGACCCACATAAGCAAGCACACAACTGGATCCGTCAGATGGAAGGACCTCGGCTGCAGGAGCTCTCCACTGAGGATAGCAATTACATCCAAACAATTGAGAATGCCATGAAAACAGGAGGGAGTGTCCTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.7=100)
A:
PF127772=MT=PD(14.3=66.7),PF127812=AAA_9=PU(2.6=8.3)
C2:
PF127812=AAA_9=FE(33.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCGAAGAAAACTGGCCA
R:
ACTCCCTCCTGTTTTCATGGC
Band lengths:
293-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development