HsaEX0020133 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225519139-225525198:+
Coord C1 exon
chr1:225519139-225519279
Coord A exon
chr1:225520993-225521208
Coord C2 exon
chr1:225524968-225525198
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATTTCTATTTTAACATTTAGACT
3' ss Score
6.46
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTGAAGAACATTTGCTGTTTTTACAGGCAGCTTACAAAGATACCGTTGCTGAAAAACAACTATTAGCAAATCGGAAAACAATGGCCAGCAGGCGCTTTCAGTGTGCGTCAGTCTTACTAACTGTCCTGGAAGATGAGAAG
Seq A exon
ACTCGATGGCAAGAAACAATCAATCAAATAGATAACAAATTAGAAGGAATTTTGGGTGACATACTTCTTTCAGCAGCGTGCATTGTCTACAGTGGAATTTTAACACCAGAATTTCGCCAGTTGATTGTGAATAAATGGGAGACATTCTGCATTGAAAATGGCATTTCTTTGTCTTCCAAATTCTCTTTAATTAAAGTTATGGCACAAAAATATGAG
Seq C2 exon
ATCAGCCGATGGCATAATCAGGGACTGCCTCATGGTCAGTATTCAGTAGAGAATGCCATCTTGATCAAGAATGGCCAGCAGTGGCCACTGCTGATTGACCCACATAGGCAAGCTCACAAATGGATCCGTCAGATGGAAGGATCCAGGCTGCAGAAGCTCTCCATTGAAGACAGCAATTATACCAAAAAAATTGAAAATGCTATGAAGACAGGAGGGAGTGTCCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(15.8=100),PF127812=AAA_9=PU(2.6=12.5)
A:
PF127772=MT=PD(14.6=68.1),PF127812=AAA_9=PU(2.6=8.3)
C2:
PF127772=MT=PD(3.7=14.1),PF127812=AAA_9=FE(33.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGAAAACAATGGCCAGCA
R:
GGACACTCCCTCCTGTCTTCA
Band lengths:
294-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)