HsaEX6036998 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225338061-225346654:+
Coord C1 exon
chr1:225338061-225338182
Coord A exon
chr1:225340457-225340701
Coord C2 exon
chr1:225346456-225346654
Length
245 bp
Sequences
Splice sites
3' ss Seq
GGTGCCTTTCTCATGTTCAGGTT
3' ss Score
8.84
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AATCTCCTTGAGACATTAGCTCCAGGCTTAAAGGCAATTCTGAAAAAGGATATCTATCAGAAAAAAGGACACTATTTCATAAGGGTTGGTGATGCTGAGTTCGAATACAATTCAAATTTTAG
Seq A exon
GTTATACTTATCTACAGAAATAGACAACCCCCATTTTCTTCCATCAGTTTATAACTTTGTTACTATGATCAACTTCACTGTAACATTCCAAGGTTTGCAAGATCAACTCTTGTCTACTGTGGTAACTCATGAAGTTCCTCATTTAGAAGATCAACGTTCCAAGTTACTGGAGAGTATTTCCCTTGATGCCATAACTCTTGAAGAACTAGAGGAAAAAACATTAAATTTACTGCAGAAAGCACTAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-71/72=70-C2
Average complexity
C3*
Mappability confidence:
98%=98=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.4=100)
A:
PF127812=AAA_9=FE(35.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGCTTAAAGGCAATT
R:
AGTCTAGACTGGGATAATGCACT
Band lengths:
298-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains