BtaEX6068017 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29068244-29076185:+
Coord C1 exon
chr16:29068244-29068365
Coord A exon
chr16:29072759-29073003
Coord C2 exon
chr16:29075764-29076185
Length
245 bp
Sequences
Splice sites
3' ss Seq
GTGCCTTTCTCACATTTTAGGTT
3' ss Score
11.69
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AATCTTCCTGAAAGATTACCTCCAAGTTTAAAGGAAATTTTGAAGAAGGATATCTACCAGAGAAGAGGACAATACTTCATAAAGATTAATGATTCTGAGATTGAATACAATTCTAAATTTAG
Seq A exon
GTTATATGTATCTACAGAAATAGACAACCCCTATTTTCCTCCATTCGTTTATAGCTTTGTTACTATGATAAACTTCACAGTAACATTCCAAGGTTTTCAAGATCAACTCTTATCTATTGTATTAAGTCATGAAGTTCCCCATTTAGAAAATCAACGTTTCCAGCTCTTAGAGAGTATTTCCCTTGATGCTAAGACTCTTGAAGAACTGGAGCAAAAAACATTAAATTTACTAGAGAATGCACAAG
Seq C2 exon
GATTTGTATTAGATGATGAGGAAATTGTAGACATCTTAAGAAAATCCAAGATGACTTCAAATGAAATTTCAAAGCGAATCAAAGCAACAAGAAAAGCAGAAAGTGAAATTGAAGAAACACGCAAATTGTATCTCCCCATTGCTACACGGGGTGCCCTGCTGTACTTTCTAGTGTCTAACCTTGCACAGATTGATTACATGTACCAGTTCTCCCTAGACTGGTTTCGTCAAATTTTTGTTTCATCAGTAGTTTCCAAAAGCAAAGAACAGGAAGAACACAGTCTGAAAAGGGAGAGAATGTTTCTGAAAAAAGGTCATGAAATCACAAATCTCTCAAAAGAGCCTAAACTGGAAAGTGAAAAAAGAACCTTAGATAGACATCTTAAAAATTCAATAGATACATTGACAAGAATCATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.4=100)
A:
PF127812=AAA_9=FE(35.7=100)
C2:
PF127812=AAA_9=PD(10.0=16.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGAAGAGGACAATACTTCA
R:
TGACGAAACCAGTCTAGGGAGA
Band lengths:
296-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]