HsaEX6036998 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225525763-225534082:+
Coord C1 exon
chr1:225525763-225525884
Coord A exon
chr1:225528159-225528403
Coord C2 exon
chr1:225533664-225534082
Length
245 bp
Sequences
Splice sites
3' ss Seq
GGTGCCTTTCTCATGTTCAGGTT
3' ss Score
8.84
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AATCTCCTTGAGACATTAGCTCCAGGCTTAAAGGCAATTCTGAAAAAGGATATCTATCAGAAAAAAGGACACTATTTCATAAGGGTTGGTGATGCTGAGTTCGAATACAATTCAAATTTTAG
Seq A exon
GTTATACTTATCTACAGAAATAGACAACCCCCATTTTCTTCCATCAGTTTATAACTTTGTTACTATGATCAACTTCACTGTAACATTCCAAGGTTTGCAAGATCAACTCTTGTCTACTGTGGTAACTCATGAAGTTCCTCATTTAGAAGATCAACGTTCCAAGTTACTGGAGAGTATTTCCCTTGATGCCATAACTCTTGAAGAACTAGAGGAAAAAACATTAAATTTACTGCAGAAAGCACTAG
Seq C2 exon
GATCCATATTAGATGATGACAAAATTGTAGATACCTTAAGAAAATCCAAAATGACATCAAACGAAATTTCAAAGCGCATCGAAGCAACAAAAAAAGCTGAAAGTGAAATCCAAGCAATACGTAAAAACTATCTCCCCATTGCGACCCGAGGCGCCCTGCTCTACTTCCTAGTAGCTGATCTCACACAAATCAACTACATGTACCAGTTCTCCCTAGACTGGTTTCATCAGGTTTTTGTTTCATCAGTAGTTTCCAAAAGCAAAGAACAAGAACATAGTTTTAAAAGGGAGAAAGTGTCTCCAAAAGAAGTTCATGAGTTTATAAGTATTTCAAAAGAACCCAACCTGGAAAATGAGAAAAATCTCTTAGATAAGCATATTAAAAGTGCAATAGACATGTTGACAAAAAGTATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'95-102,'95-101,97-102=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.4=100)
A:
PF127812=AAA_9=FE(35.2=100)
C2:
PF127812=AAA_9=PD(10.4=17.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTGAGACATTAGCTCCAGG
R:
ACTAGGAAGTAGAGCAGGGCG
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)