HsaEX6037007 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225307461-225346654:+
Coord C1 exon
chr1:225307461-225307569
Coord A exon
chr1:225308285-225308410
Coord C2 exon
chr1:225346456-225346654
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACAATTATGTGCTTCATTAGGAA
3' ss Score
6.18
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGATCGCTTCCATATGGGTCTATCCACAATCCTGGAAGCAACCACTCTAGTTACAGAAATGCAAGAAGAGCTCTTGATTCTTGGCCCTCAAGTAGAACAAAAAACAAAG
Seq A exon
GAAACAGAAACTCTAATGGAAAAACTACGGAAAGATTCACAAGTAGTTGAGAAAGTTCAGATGCTTGTTAAACAGGATGAAGAAATTGTGGCAGAAGAAGTAAGAATTGTGGAAGATTATGCTCAG
Seq C2 exon
GTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_MULTIEX2-61/72=60-C2
Average complexity
C3
Mappability confidence:
98%=98=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(11.8=94.6)
A:
PF127772=MT=FE(14.1=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGCTTCCATATGGGTCT
R:
TGTTCCATTCTTCTTCTGGTAGGA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains