HsaEX6037007 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225495163-225506379:+
Coord C1 exon
chr1:225495163-225495271
Coord A exon
chr1:225495987-225496112
Coord C2 exon
chr1:225506285-225506379
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACAATTATGTGCTTCATTAGGAA
3' ss Score
6.18
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGATCGCTTCCATATGGGTCTATCCACAATCCTGGAAGCAACCACTCTAGTTACAGAAATGCAAGAAGAGCTCTTGATTCTTGGCCCTCAAGTAGAACAAAAAACAAAG
Seq A exon
GAAACAGAAACTCTAATGGAAAAACTACGGAAAGATTCACAAGTAGTTGAGAAAGTTCAGATGCTTGTTAAACAGGATGAAGAAATTGTGGCAGAAGAAGTAAGAATTGTGGAAGATTATGCTCAG
Seq C2 exon
AAAACTGCCAATGAACTAAAAAGTGTGCTGCCAGCCTTTGACAAGGCAATTGTGGCTCTGAATGCCCTGGATAAAGCTGATGTCGCTGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'86-92,'86-91,87-92=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(11.8=94.6)
A:
PF127772=MT=FE(14.1=100)
C2:
PF127772=MT=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGCTTCCATATGGGTCT
R:
CTTAATTCAGCGACATCAGCTT
Band lengths:
204-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)